Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RYQ61_RS04300 Genome accession   NZ_CP136799
Coordinates   805781..806554 (+) Length   257 a.a.
NCBI ID   WP_082311941.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 800781..811554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS04280 (RYQ61_04280) mreD 801559..802059 (+) 501 WP_003075140.1 rod shape-determining protein MreD -
  RYQ61_RS04285 (RYQ61_04285) pcsB 802169..803350 (+) 1182 WP_003077627.1 peptidoglycan hydrolase PcsB -
  RYQ61_RS04290 (RYQ61_04290) - 803484..804452 (+) 969 WP_003075138.1 ribose-phosphate diphosphokinase -
  RYQ61_RS04295 (RYQ61_04295) - 804616..805803 (+) 1188 WP_082311942.1 pyridoxal phosphate-dependent aminotransferase -
  RYQ61_RS04300 (RYQ61_04300) recO 805781..806554 (+) 774 WP_082311941.1 DNA repair protein RecO Machinery gene
  RYQ61_RS04305 (RYQ61_04305) plsX 806551..807549 (+) 999 WP_082311940.1 phosphate acyltransferase PlsX -
  RYQ61_RS04310 (RYQ61_04310) - 807546..807791 (+) 246 WP_003075134.1 acyl carrier protein -
  RYQ61_RS04315 (RYQ61_04315) purC 807935..808642 (+) 708 WP_082311939.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30109.64 Da        Isoelectric Point: 5.6003

>NTDB_id=815657 RYQ61_RS04300 WP_082311941.1 805781..806554(+) (recO) [Streptococcus intermedius strain XH2169]
MLKSITSKGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVRNSKLSPVIQPLVVANFLMKVNDDGLSYIDDYQEVTVFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFAFLQKMLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRIG
LPFDFSFTYNGVLCPEHYSKDERRSHLEPNILYLLDQFQAVQFNDLKTISLNSELKYQLRKVIDQIYEEYVGIHLKSKKF
IDSLEDWGEILKNKELK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=815657 RYQ61_RS04300 WP_082311941.1 805781..806554(+) (recO) [Streptococcus intermedius strain XH2169]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAACCGTAATTTTCGTGAAGATGATAAGCTAGTTAAAATTTT
CACAGAACAAGCTGGCAAGAGGATGTTTTTCGTGAAACACGTTAGAAATTCTAAGTTAAGTCCAGTTATTCAACCTCTGG
TAGTCGCTAATTTTTTGATGAAGGTAAATGATGACGGTTTGAGCTATATTGATGATTATCAAGAGGTTACCGTTTTCCAG
CATATCAACCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTAGCGGATGCTAGTATTCAGGATAACGA
AATAGACTCTGCTCTCTTTGCTTTTTTGCAAAAAATGTTAGAATTGATGGAGCAAGGTTTGGATTACGAAGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGCGTTTCTTTGAATTTTCATGAGTGTTGTTTTTGCCACCGAATAGGG
CTACCGTTTGATTTTTCTTTTACCTATAATGGCGTTTTATGTCCAGAACATTATAGCAAAGATGAGCGACGGAGTCATTT
GGAACCCAATATTCTTTATTTATTAGACCAATTTCAAGCAGTTCAATTTAATGACCTGAAAACAATTTCGTTAAATTCTG
AATTAAAATATCAATTGCGAAAAGTAATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAATCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAGAAATCTTAAAGAACAAGGAGTTGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

73.333

99.222

0.728