Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RYQ61_RS01015 Genome accession   NZ_CP136799
Coordinates   195877..196830 (+) Length   317 a.a.
NCBI ID   WP_003072006.1    Uniprot ID   T1ZDK0
Organism   Streptococcus intermedius strain XH2169     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 190877..201830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS00995 (RYQ61_00995) - 192944..193636 (-) 693 WP_003036126.1 phosphoglycerate mutase -
  RYQ61_RS01000 (RYQ61_01000) - 193774..194235 (-) 462 WP_082312217.1 Fur family transcriptional regulator -
  RYQ61_RS01005 (RYQ61_01005) - 194403..194678 (-) 276 WP_003036014.1 HU family DNA-binding protein -
  RYQ61_RS01010 (RYQ61_01010) - 194807..195640 (-) 834 WP_003076577.1 DegV family protein -
  RYQ61_RS01015 (RYQ61_01015) ceuB 195877..196830 (+) 954 WP_003072006.1 ABC transporter permease Machinery gene
  RYQ61_RS01020 (RYQ61_01020) - 196823..197785 (+) 963 WP_102567866.1 iron chelate uptake ABC transporter family permease subunit -
  RYQ61_RS01025 (RYQ61_01025) - 197786..198538 (+) 753 WP_003072001.1 ABC transporter ATP-binding protein -
  RYQ61_RS01030 (RYQ61_01030) - 198560..199531 (+) 972 WP_102567865.1 siderophore ABC transporter substrate-binding protein -
  RYQ61_RS01035 (RYQ61_01035) - 199594..200325 (-) 732 WP_102567864.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35337.17 Da        Isoelectric Point: 10.0791

>NTDB_id=815612 RYQ61_RS01015 WP_003072006.1 195877..196830(+) (ceuB) [Streptococcus intermedius strain XH2169]
MKQTKFLGILCLILAFISIMVGASSFSWHKLLSGETNTWLLFLESRLPRTISIILAGSSMSIAGLLMQSVTQNHFAAPST
IGTVNAAKFGMLLSLFFFPTANLAQKMLFAFLSSIFFTIIFIRFIRKLSFKEKWLLPLVGIIYSGVISAAAEILAYRFDL
VQSMTSWTQGSFAMIQTHQYEWLFLSFVILIAVWRLSATFTIMNLGEDASHNLGISFYQMEGLSLFLIALTTSVTMITVG
SLPFIGVIVPNIVRKFYGDHITRIKSITALTGAGLILICDIMSRMVIRPYEISVSLILGIFGSLTFIYLLWRGATHE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=815612 RYQ61_RS01015 WP_003072006.1 195877..196830(+) (ceuB) [Streptococcus intermedius strain XH2169]
ATGAAACAGACAAAATTTTTAGGAATTCTTTGTCTTATACTGGCTTTCATTTCAATTATGGTTGGTGCTAGCAGTTTTTC
TTGGCATAAACTACTTAGTGGTGAGACGAACACTTGGCTGTTGTTTTTAGAGTCACGCTTACCAAGGACCATTAGTATCA
TTTTGGCAGGTTCTAGTATGAGTATTGCAGGGCTTTTGATGCAATCTGTTACACAGAATCATTTTGCGGCGCCTAGTACA
ATTGGAACAGTAAATGCTGCAAAGTTCGGTATGCTTCTCAGCCTCTTCTTCTTTCCAACAGCAAATTTGGCTCAAAAAAT
GCTCTTCGCCTTTCTCTCTTCTATTTTTTTTACGATTATTTTTATTAGATTTATCAGAAAATTATCATTTAAGGAAAAAT
GGTTGCTGCCACTTGTCGGAATTATCTATAGTGGTGTCATTAGTGCAGCTGCTGAAATTCTTGCCTATCGTTTTGATCTA
GTGCAAAGTATGACATCGTGGACGCAAGGATCTTTTGCAATGATTCAGACACATCAATATGAGTGGCTTTTTTTGAGTTT
TGTTATTCTGATTGCTGTCTGGCGGTTGTCTGCTACTTTTACAATCATGAATCTAGGAGAAGATGCTAGCCATAATCTAG
GGATATCTTTTTATCAAATGGAAGGATTGAGCCTATTTCTCATTGCTCTCACAACCAGTGTGACAATGATTACAGTAGGC
TCGCTTCCTTTCATAGGCGTGATTGTACCAAATATTGTGCGAAAATTTTATGGAGATCATATCACGCGCATCAAAAGTAT
TACTGCCCTGACAGGAGCAGGCTTGATTTTAATCTGTGATATTATGTCACGTATGGTGATCCGTCCCTACGAAATCTCAG
TTAGTTTGATTCTGGGAATTTTTGGAAGTTTAACATTCATTTATCTTTTATGGCGAGGTGCCACTCATGAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZDK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.5

98.423

0.369