Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   R1Y80_RS33470 Genome accession   NZ_CP136798
Coordinates   7490207..7492648 (-) Length   813 a.a.
NCBI ID   WP_354598631.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7485207..7497648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS33450 (R1Y80_33420) - 7485740..7486636 (-) 897 WP_128807329.1 LysR substrate-binding domain-containing protein -
  R1Y80_RS33455 (R1Y80_33425) - 7486768..7487436 (+) 669 WP_354599005.1 succinate dehydrogenase -
  R1Y80_RS33460 (R1Y80_33430) - 7487438..7489387 (+) 1950 WP_354598630.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  R1Y80_RS33465 (R1Y80_33435) - 7489384..7490130 (+) 747 WP_006129184.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  R1Y80_RS33470 (R1Y80_33440) uvrA 7490207..7492648 (-) 2442 WP_354598631.1 excinuclease ABC subunit UvrA Machinery gene
  R1Y80_RS33475 (R1Y80_33445) - 7492752..7493750 (-) 999 WP_354599006.1 MsnO8 family LLM class oxidoreductase -
  R1Y80_RS33480 (R1Y80_33450) - 7493853..7494341 (+) 489 WP_093807034.1 hypothetical protein -
  R1Y80_RS33485 (R1Y80_33455) - 7494342..7494557 (-) 216 WP_006129191.1 dodecin -
  R1Y80_RS33490 (R1Y80_33460) - 7494761..7496017 (+) 1257 WP_107414461.1 extracellular solute-binding protein -
  R1Y80_RS33495 (R1Y80_33465) - 7496204..7497019 (+) 816 WP_354598632.1 GNAT family N-acyltransferase -

Sequence

Protein


Download         Length: 813 a.a.        Molecular weight: 86579.79 Da        Isoelectric Point: 6.6365

>NTDB_id=815599 R1Y80_RS33470 WP_354598631.1 7490207..7492648(-) (uvrA) [Streptomyces sp. JL1001]
MHSPHDPYVRVRGAREHNLKDVRVDIPRDTLTVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGDYPPGAERLDSDSFSPNTAVGACPECHGLGRIHRTDEEL
LVPDPSLSIREGAIAAWPGAWQGKNLRDVLDALGHDVDRPWRELDPKDREWILFTDEQPVVTVHPVRDAGRIQRPYQGTY
MSARRYVLHTFADTRSRSLRAKAERFLTSAPCPVCGGSRLRAEAMAVTFAGRTIAELAGLPLSVLAAVLSGAGADGAGAG
GEETARVLTADLLARIGTVTELGLGYLSLDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLGVL
GRLKEAGNSVFVVEHQMDVVRRADWLVDVGPLAGEHGGRVLHSGPPEGLAQVPESATRRFLFPEDGRDTAPAREPRTPSG
WIRLTGVERHNVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGVLADRQSGEEATGASERFCASVTGLEAVDRLVQVD
QKPIGRTPRSNLATYTGLFDAVRKLFARTETARERGYGAGRFSFNVSGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGA
RYNPETLDVTLDGLTIAQVLDLTVESAASFFAGTPAAERALRTLLDVGLGYLRLGQPATELSGGEAQRIKLAAELQRTRR
GHTLYLLDEPTTGLHPADVEVLMRQLHALVDGGSTVVVVEHDMAVVAGADQVIDLGPEGGDRGGRIVAAGTPAEVARDAG
SRTAPYLAKALRG

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=815599 R1Y80_RS33470 WP_354598631.1 7490207..7492648(-) (uvrA) [Streptomyces sp. JL1001]
ATGCACTCCCCCCACGATCCGTACGTCCGGGTGCGCGGCGCACGCGAGCACAACCTCAAGGACGTCCGGGTCGACATCCC
GCGCGACACCCTGACCGTCTTCACGGGCGTGTCGGGATCGGGGAAGTCCTCGCTGGCGTTCGGCACGATCTACGCCGAGG
CGCAGCGCCGCTACTTCGAGTCCGTCGCCCCCTACGCCCGCCGGCTGATCCACCAGGTGGGCGCACCCGCCGTCGGGGAG
ATCACCGGGCTGCCGCCCGCCGTCTCGCTGGAGCAGCGGCGCTCCGCGCCGGGGGCCCGGTCGTCCGTCGGGACGGTCAC
CACGCTCTCCAACTCGTTGCGGATGCTGTTCTCCCGGGCCGGGGACTATCCGCCGGGGGCCGAGCGGCTGGACTCCGATT
CCTTCTCCCCCAACACGGCGGTCGGGGCGTGCCCGGAGTGCCACGGGCTGGGGCGGATCCACCGGACGGACGAGGAGCTG
CTCGTCCCGGATCCCTCCCTGTCGATCCGGGAGGGGGCGATCGCCGCCTGGCCGGGGGCGTGGCAGGGGAAGAACCTGCG
CGACGTGCTGGACGCGCTGGGCCACGACGTCGACCGGCCCTGGCGGGAGCTGGACCCGAAGGACCGCGAGTGGATCCTGT
TCACCGACGAGCAGCCCGTGGTGACCGTGCATCCGGTGCGGGACGCGGGCCGGATCCAACGCCCTTACCAGGGCACGTAC
ATGAGCGCGCGGCGCTATGTGCTGCACACCTTCGCCGATACCAGGAGCCGGTCTCTGAGGGCGAAGGCCGAGCGCTTTCT
GACCAGCGCCCCGTGCCCGGTGTGCGGCGGGAGCCGGCTGCGGGCCGAGGCGATGGCGGTGACCTTCGCGGGGCGGACCA
TCGCGGAACTGGCCGGGCTGCCGCTGTCCGTGCTCGCGGCAGTGCTGTCGGGTGCCGGGGCCGACGGTGCGGGGGCCGGC
GGCGAGGAGACGGCCCGGGTGCTGACGGCCGATCTGCTGGCGCGGATCGGGACGGTGACGGAGCTGGGGCTCGGCTATCT
GAGCCTGGACCGGACGGCCCCGACACTGTCCTCCGGTGAGCTGCAACGGCTGCGGCTGGCCACGCAGTTGCGGTCCGGGC
TCTTCGGTGTCGTGTACGTCCTGGACGAGCCGTCGGCCGGGCTGCATCCGGCGGACACCGAGGCGCTGCTCGGGGTGCTG
GGGCGGCTCAAGGAGGCCGGGAACTCGGTCTTCGTGGTGGAGCACCAGATGGACGTGGTGCGGCGGGCGGACTGGCTGGT
GGACGTGGGCCCGCTGGCCGGGGAGCACGGCGGGCGGGTGCTGCACAGCGGGCCGCCGGAGGGGCTCGCCCAGGTCCCGG
AGTCGGCGACGCGCCGCTTCCTGTTCCCCGAGGACGGCCGGGACACCGCACCGGCCCGTGAGCCGCGCACCCCGTCCGGG
TGGATCCGGCTCACCGGCGTGGAGCGGCACAATGTGCGCGGCGTCGACGCGGCGTTCCCGCTCGGGGTGTTCACGGCGGT
GACCGGGGTGTCCGGCTCGGGCAAGTCGACCCTGGTCGGCCAGGTGCTCGCCGGGGTGCTGGCCGACCGGCAGTCCGGCG
AGGAGGCGACCGGGGCGAGCGAGCGGTTCTGCGCTTCCGTCACCGGTCTTGAGGCGGTGGACCGGCTCGTCCAGGTCGAC
CAGAAGCCCATCGGGCGTACGCCCCGGTCCAATCTGGCCACGTACACCGGCCTGTTCGACGCCGTACGGAAGCTGTTCGC
GCGGACGGAGACAGCACGGGAGCGCGGCTACGGGGCGGGGCGGTTCTCGTTCAACGTGAGCGGCGGACGGTGCGAGACCT
GCCAGGGCGAGGGCTTCGTCTCGGTGGAGCTGCTGTTCCTGCCCAGCACGTACGCGCCCTGTCCGGACTGTCATGGTGCG
CGCTACAACCCGGAGACGCTGGACGTCACGCTGGACGGTCTGACGATCGCTCAGGTCCTGGATCTGACCGTGGAGTCGGC
GGCCTCCTTCTTTGCCGGGACGCCCGCCGCCGAACGCGCGCTGAGGACCCTGCTGGACGTGGGGCTCGGCTACCTGCGGC
TGGGGCAGCCCGCCACGGAGCTGTCCGGCGGTGAGGCGCAGCGCATCAAACTGGCGGCGGAGCTCCAGCGCACCCGGCGC
GGGCACACGCTGTATCTGCTGGACGAGCCGACGACCGGGCTGCATCCGGCCGATGTGGAAGTGCTGATGCGGCAGTTGCA
CGCGCTCGTCGACGGCGGGAGCACGGTGGTGGTCGTGGAGCACGACATGGCCGTCGTGGCGGGCGCGGACCAGGTCATCG
ACCTCGGCCCCGAGGGCGGGGACCGGGGCGGCCGGATCGTCGCGGCCGGCACCCCGGCCGAGGTGGCGCGGGACGCCGGG
AGCCGCACGGCCCCGTATCTGGCGAAGGCGCTGCGCGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(494-731)

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.169

84.625

0.365
  uvrA Streptococcus pneumoniae TIGR4

43.169

84.625

0.365
  uvrA Streptococcus pneumoniae D39

43.169

84.625

0.365