Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   R1Y80_RS32380 Genome accession   NZ_CP136798
Coordinates   7244823..7247150 (-) Length   775 a.a.
NCBI ID   WP_354598519.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7239823..7252150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS32365 (R1Y80_32335) - 7239920..7240174 (+) 255 WP_006128884.1 WhiB family transcriptional regulator -
  R1Y80_RS32370 (R1Y80_32340) - 7240244..7243618 (+) 3375 WP_354598518.1 hypothetical protein -
  R1Y80_RS32375 (R1Y80_32345) - 7243661..7244635 (-) 975 WP_032762700.1 acyl-ACP desaturase -
  R1Y80_RS32380 (R1Y80_32350) uvrA 7244823..7247150 (-) 2328 WP_354598519.1 excinuclease ABC subunit UvrA Machinery gene
  R1Y80_RS32385 (R1Y80_32355) - 7247336..7248157 (+) 822 WP_354598520.1 alpha/beta hydrolase -
  R1Y80_RS32390 (R1Y80_32360) - 7248167..7249006 (+) 840 WP_354598521.1 helix-turn-helix domain-containing protein -
  R1Y80_RS32395 (R1Y80_32365) - 7249076..7250707 (-) 1632 WP_100561090.1 ABC-F family ATP-binding cassette domain-containing protein -
  R1Y80_RS32400 (R1Y80_32370) - 7250924..7251340 (-) 417 WP_078614374.1 SsgA family sporulation/cell division regulator -

Sequence

Protein


Download         Length: 775 a.a.        Molecular weight: 83263.15 Da        Isoelectric Point: 6.2206

>NTDB_id=815596 R1Y80_RS32380 WP_354598519.1 7244823..7247150(-) (uvrA) [Streptomyces sp. JL1001]
MDRFPDRDAEPYTPGAAHRDIVITGARENNLRDVSLRIPKGRITVFTGVSGSGKSSVVFDTIAVESQRQLNETFTSFLRN
RLPKYERPHVESVEDLSVAIVIDQKPLGGNVRSTVGTATDIWSVLRVLFSRYGTPSAGGATAYSFNDPAGMCPECDGVGR
TVQLDLDRAIDWSKSLNEGALLLPGLSVGSWEWNLYGGSGRFDNDLPLAEYGEEERRLLLYGSGFTVRLDLRTGSADMKF
EGVVTRFERLYLKRDTASLSEKRREAAARFTVERVCGSCGGARLNAAALATRIHGLSPADYGRMEVAELVGVLERIDDPV
GGPIAAAARERLERLVGIGLGYLSLDRETTTLSGGEGQRLKMVRHLGSSLTGLTFVFDEPSVGLHPRDVGRLGDLLVRLR
DKGNTVLVVEHDPDVMAVADHVVDMGPRAGADGGHIVFEGPFERLRETDTLTGRSLRRRTPVKGAVRSPTGQLPVHGADL
HNLKGLDVSFPAGVLTAVTGVAGSGKSTLVSRVFTAAYPDAVVIDQSAITASSRSTPASYIGALDTIRKVFARENGVDAG
LFSFNSAGACAGCSGRGEISTDLAFMDPVSATCPECEGRRFHDDVLKHRVGGRSIVDVLEMTAARAVGLFEDRALLRKLR
TLDEVGLTYLTLGQPLSTLSGGERQRIKLATQLHRTSSVYVLDEPTTGLHLADTGTLVDLLDRLVDAGNTVICVEHNLEV
VKRADWVIDLGPEGGKGGGELVFAGTPAELLAHPTSVTGRYLRRDPGVESPNPES

Nucleotide


Download         Length: 2328 bp        

>NTDB_id=815596 R1Y80_RS32380 WP_354598519.1 7244823..7247150(-) (uvrA) [Streptomyces sp. JL1001]
ATGGATCGCTTCCCCGACCGCGACGCGGAGCCGTACACCCCCGGCGCCGCCCACCGCGACATCGTCATCACCGGCGCGCG
CGAGAACAATCTGCGCGACGTATCCCTCCGTATCCCCAAGGGCCGGATCACCGTCTTCACCGGTGTCTCGGGTTCGGGCA
AGTCGTCGGTCGTCTTCGACACGATCGCCGTGGAGTCGCAGCGGCAGCTGAACGAGACGTTCACCTCGTTCCTGCGCAAC
CGGCTGCCGAAGTACGAGCGGCCGCACGTCGAGTCCGTCGAGGACCTGTCGGTGGCCATCGTGATCGACCAGAAGCCGCT
CGGCGGCAACGTCCGCTCCACGGTGGGCACGGCGACCGACATCTGGTCGGTGCTCCGCGTGCTGTTCTCCCGGTACGGGA
CCCCGAGCGCGGGAGGGGCGACCGCGTACTCCTTCAACGATCCCGCCGGGATGTGCCCGGAGTGCGACGGGGTGGGGCGC
ACGGTCCAGCTGGATCTGGACCGGGCGATCGACTGGTCGAAGTCGCTGAACGAGGGGGCGCTGCTGCTGCCCGGTCTGTC
GGTGGGCAGCTGGGAGTGGAATCTGTACGGCGGGTCGGGACGGTTCGACAACGACCTGCCGCTGGCCGAGTACGGCGAGG
AGGAACGCCGGCTCCTGCTGTACGGATCGGGATTCACCGTCCGCCTCGACCTGCGGACCGGGTCGGCCGACATGAAGTTC
GAGGGGGTCGTGACCCGCTTCGAGCGCCTGTATCTCAAGCGCGACACCGCTTCTCTCTCCGAGAAGCGCCGCGAGGCCGC
CGCGCGGTTCACCGTGGAGCGGGTCTGCGGATCCTGCGGCGGGGCTCGGCTGAACGCGGCGGCGCTCGCCACCCGGATCC
ACGGGCTCTCGCCCGCCGACTACGGGCGGATGGAGGTCGCCGAACTCGTCGGCGTACTGGAGCGGATCGACGATCCGGTG
GGCGGGCCCATCGCCGCCGCGGCCCGGGAACGGCTGGAGCGGCTGGTGGGCATCGGGCTCGGCTATCTGAGCCTGGACCG
GGAGACCACGACCCTGTCGGGCGGCGAGGGCCAGCGGCTCAAGATGGTGCGGCACCTGGGGAGTTCGCTCACCGGGCTGA
CGTTCGTCTTCGACGAGCCCAGCGTCGGACTGCATCCGCGCGACGTGGGCAGGCTGGGCGATCTGCTGGTGCGACTGCGC
GACAAGGGCAACACGGTGCTGGTCGTCGAACACGACCCGGATGTGATGGCGGTCGCCGACCATGTCGTCGACATGGGGCC
GCGGGCCGGTGCCGACGGCGGCCACATCGTCTTCGAGGGGCCGTTCGAGCGGCTGCGCGAGACCGATACGCTCACCGGCC
GGTCGCTGCGCCGCCGCACCCCGGTGAAGGGGGCCGTGCGCTCCCCCACCGGGCAGCTCCCGGTGCACGGAGCGGATCTG
CACAACCTCAAGGGGCTGGACGTGTCGTTCCCCGCCGGGGTGCTGACCGCGGTGACGGGGGTGGCCGGGTCCGGGAAGTC
GACGCTGGTGTCGCGGGTGTTCACGGCGGCGTACCCGGACGCGGTGGTGATCGACCAGAGCGCGATCACGGCCTCGTCCC
GTTCGACCCCCGCCTCGTACATCGGCGCGCTGGACACCATCCGCAAGGTGTTCGCCCGGGAGAACGGGGTGGACGCGGGG
CTGTTCAGCTTCAACTCCGCCGGGGCGTGCGCGGGCTGCTCGGGCCGTGGCGAGATCTCGACGGACCTGGCGTTCATGGA
TCCGGTCAGCGCGACCTGCCCGGAGTGCGAGGGCCGCCGGTTCCACGACGACGTGCTGAAGCACCGGGTCGGCGGCCGGT
CGATCGTGGACGTCCTGGAGATGACGGCGGCGCGGGCGGTCGGACTGTTCGAGGACCGCGCACTGCTGCGGAAGCTGCGC
ACGCTCGACGAGGTCGGGCTCACCTACCTCACGCTCGGGCAGCCGCTCAGCACGCTCTCGGGCGGTGAGCGCCAGCGGAT
CAAGCTCGCCACCCAGCTGCACCGCACCTCCAGCGTGTACGTGCTGGACGAGCCGACGACCGGACTGCACCTGGCGGACA
CGGGCACGCTGGTGGACCTGCTGGACCGGCTGGTCGACGCGGGGAACACCGTGATCTGCGTGGAACACAACCTGGAGGTG
GTCAAGCGGGCGGACTGGGTGATCGACCTCGGCCCGGAGGGCGGCAAGGGCGGCGGGGAGCTGGTCTTCGCGGGGACACC
CGCCGAGCTGCTCGCGCATCCGACGTCCGTCACGGGCCGGTATCTGCGCCGGGATCCAGGGGTGGAATCACCGAATCCGG
AAAGCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(165-261)

ABC transporter (ABC_tran)

(483-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

37.995

97.806

0.372
  uvrA Streptococcus pneumoniae TIGR4

37.995

97.806

0.372
  uvrA Streptococcus pneumoniae D39

37.995

97.806

0.372