Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R1Y80_RS29110 Genome accession   NZ_CP136798
Coordinates   6474762..6475853 (+) Length   363 a.a.
NCBI ID   WP_354598229.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6469762..6480853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS29095 (R1Y80_29065) - 6471039..6472784 (+) 1746 WP_354598226.1 ABC transporter substrate-binding protein -
  R1Y80_RS29100 (R1Y80_29070) - 6472805..6473776 (+) 972 WP_354598227.1 ABC transporter permease -
  R1Y80_RS29105 (R1Y80_29075) - 6473773..6474759 (+) 987 WP_354598228.1 ABC transporter permease -
  R1Y80_RS29110 (R1Y80_29080) amiE 6474762..6475853 (+) 1092 WP_354598229.1 ABC transporter ATP-binding protein Regulator
  R1Y80_RS29115 (R1Y80_29085) - 6475850..6476884 (+) 1035 WP_354598230.1 ABC transporter ATP-binding protein -
  R1Y80_RS29120 (R1Y80_29090) - 6477224..6479485 (+) 2262 WP_354598979.1 collagenase -
  R1Y80_RS29125 (R1Y80_29095) - 6479650..6480708 (+) 1059 WP_006128220.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38544.15 Da        Isoelectric Point: 7.1290

>NTDB_id=815591 R1Y80_RS29110 WP_354598229.1 6474762..6475853(+) (amiE) [Streptomyces sp. JL1001]
MEPTTEPHQLLEPDQPLLRVHDLRVAFDTPAGAVQAVDGVSFTVAAGRTLGLVGESGSGKSVTSLAVMGLHRRARVSGSI
TLAGEELLGLTDRRFGRLRGRRMAMVFQDPLSALHPAYTVGEQIAEAHRHHFGSARRVARRRAVDMLGEVGIPEPARRAG
EFPHQFSGGMRQRAMIAMALSCEPELLVADEPTTALDVTVQAQILELIARLQQERGLGVLMITHDLGVVARVAHEVLVMY
GGRGAEQAPVDALFSSPAHPYTRGLLDSLPRLDDPDDAPLRAIPGSPPSPAEPRTGCPFAPRCPRAAAATAPERARCAGE
SPRPRDVPGEGRLVACHLPLPAAPAVPHPGPPGVAPVPAEEAR

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=815591 R1Y80_RS29110 WP_354598229.1 6474762..6475853(+) (amiE) [Streptomyces sp. JL1001]
GTGGAGCCCACCACCGAACCTCATCAGCTTCTCGAACCGGACCAGCCCCTGCTGCGCGTCCACGATCTGCGGGTCGCCTT
CGACACCCCGGCCGGAGCCGTCCAGGCCGTCGACGGGGTCTCCTTCACCGTGGCGGCCGGCCGCACCCTGGGCCTGGTCG
GCGAGTCCGGCTCCGGCAAGTCGGTCACCTCCCTCGCCGTGATGGGCCTGCACCGCCGGGCCCGGGTGAGCGGATCGATC
ACCCTCGCCGGAGAGGAACTTCTCGGCCTGACCGACCGCCGGTTCGGCCGGCTGCGCGGGCGCCGGATGGCGATGGTCTT
CCAGGACCCGCTGTCCGCGCTGCACCCCGCGTACACCGTCGGCGAACAGATCGCGGAGGCCCACCGCCACCACTTCGGCA
GCGCCCGACGCGTCGCCCGCAGAAGGGCGGTGGACATGCTCGGCGAGGTCGGCATCCCCGAACCGGCCCGCCGGGCGGGG
GAGTTCCCGCACCAGTTCTCCGGCGGCATGCGCCAGCGCGCCATGATCGCCATGGCCCTGTCCTGCGAACCCGAACTGCT
CGTCGCCGACGAGCCGACCACCGCGCTCGACGTCACCGTCCAGGCGCAGATCCTCGAACTGATCGCCCGCCTCCAGCAGG
AACGCGGACTGGGCGTCCTGATGATCACGCACGACCTGGGCGTGGTGGCGCGCGTCGCCCACGAGGTGCTCGTCATGTAC
GGCGGACGCGGCGCCGAACAGGCGCCGGTGGACGCGCTGTTCAGCAGCCCCGCGCATCCCTACACCCGCGGCCTCCTGGA
CTCGCTGCCCCGTCTGGACGACCCCGACGACGCACCCCTGCGCGCCATCCCCGGCTCCCCGCCGTCACCGGCCGAGCCGC
GAACCGGCTGCCCCTTCGCACCGCGCTGCCCCCGCGCGGCCGCCGCCACCGCCCCGGAGCGGGCCCGCTGCGCCGGGGAG
AGCCCCCGCCCCCGGGACGTACCCGGCGAGGGGCGGCTCGTCGCCTGCCACCTTCCCCTGCCGGCCGCCCCGGCCGTCCC
GCACCCCGGTCCGCCGGGCGTGGCTCCCGTACCGGCCGAGGAGGCCCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(38-193)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(246-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

45.631

85.124

0.388
  amiE Streptococcus thermophilus LMG 18311

45.307

85.124

0.386
  amiE Streptococcus thermophilus LMD-9

45.307

85.124

0.386
  oppD Streptococcus mutans UA159

47.44

80.716

0.383