Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R1Y80_RS24765 Genome accession   NZ_CP136798
Coordinates   5426664..5427722 (+) Length   352 a.a.
NCBI ID   WP_093442429.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5421664..5432722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS24750 (R1Y80_24730) - 5423026..5424645 (+) 1620 WP_032763392.1 ABC transporter substrate-binding protein -
  R1Y80_RS24755 (R1Y80_24735) - 5424774..5425703 (+) 930 WP_032763391.1 ABC transporter permease -
  R1Y80_RS24760 (R1Y80_24740) - 5425696..5426652 (+) 957 WP_100563747.1 ABC transporter permease -
  R1Y80_RS24765 (R1Y80_24745) amiE 5426664..5427722 (+) 1059 WP_093442429.1 ABC transporter ATP-binding protein Regulator
  R1Y80_RS24770 (R1Y80_24750) - 5427715..5428863 (+) 1149 WP_093442427.1 dipeptide ABC transporter ATP-binding protein -
  R1Y80_RS24775 (R1Y80_24755) - 5429029..5430666 (+) 1638 WP_100563749.1 ABC transporter substrate-binding protein -
  R1Y80_RS24780 (R1Y80_24760) - 5430788..5431711 (+) 924 WP_006127343.1 ABC transporter permease -
  R1Y80_RS24785 (R1Y80_24765) - 5431704..5432681 (+) 978 WP_354597954.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38184.07 Da        Isoelectric Point: 6.4135

>NTDB_id=815573 R1Y80_RS24765 WP_093442429.1 5426664..5427722(+) (amiE) [Streptomyces sp. JL1001]
MTTIDKTAHVPAPRESVSGDGPLLDVRDLHVEFHTRDGVAKAVNGVNYTVSAGETLAVLGESGSGKSVTAQTIMGILDMP
PGKITQGEILFRGQDMLKMSNEERRKIRGSKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGLSRKDAKAKSIELMDQVK
IPAAAARISDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVGELYSRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPAGCAFSPRCPKAQDICRT
DVPPLAPVTEQDGLELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=815573 R1Y80_RS24765 WP_093442429.1 5426664..5427722(+) (amiE) [Streptomyces sp. JL1001]
GTGACCACCATCGACAAGACGGCTCACGTCCCCGCACCGCGGGAGTCCGTGAGTGGCGACGGTCCACTGCTCGACGTCCG
TGACCTGCACGTGGAGTTCCACACCCGCGACGGTGTGGCCAAGGCGGTCAACGGTGTGAACTACACCGTCAGCGCCGGCG
AGACGCTCGCCGTGCTCGGTGAGTCCGGCTCCGGCAAGTCCGTGACCGCGCAGACCATCATGGGCATCCTCGACATGCCG
CCCGGGAAGATCACGCAGGGCGAGATCCTCTTCCGCGGTCAGGACATGCTGAAGATGTCCAACGAGGAGCGCCGGAAGAT
CCGCGGCAGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTCCTCACCGTCGGCTACCAGCTCG
GCGAGATGTTCCGGGTGCACCAGGGCCTGTCCCGCAAGGACGCCAAGGCCAAGTCCATCGAGCTGATGGACCAGGTCAAG
ATCCCGGCGGCGGCGGCCCGTATCTCGGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCGACCACCGCGCTCGACGTGACGGTGCAGGCCCAGGTCA
TGGACCTGCTGGCCGAGCTCCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGACGGCCCCGGTCGGCGAGCTGTACAGCCGCCCGGC
CCACCCGTACACCCGGGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGGC
TGCCGCCCAACCTGACGCGTATCCCCGCGGGCTGTGCCTTCAGCCCGCGCTGCCCCAAGGCACAGGACATCTGCCGCACG
GACGTCCCGCCGCTCGCCCCGGTGACCGAGCAGGACGGCCTCGAGCTGGTCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.485

87.784

0.443
  amiE Streptococcus thermophilus LMG 18311

49.838

87.784

0.437
  amiE Streptococcus thermophilus LMD-9

49.838

87.784

0.437
  oppD Streptococcus mutans UA159

47.727

87.5

0.418