Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R1Y80_RS16295 Genome accession   NZ_CP136798
Coordinates   3627243..3627887 (+) Length   214 a.a.
NCBI ID   WP_354597326.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3622243..3632887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS16275 (R1Y80_16255) - 3622378..3623778 (-) 1401 WP_354597322.1 M1 family metallopeptidase -
  R1Y80_RS16280 (R1Y80_16260) - 3623851..3625011 (-) 1161 WP_354597323.1 hypothetical protein -
  R1Y80_RS16285 (R1Y80_16265) - 3625054..3625611 (-) 558 WP_354597324.1 heme-binding protein -
  R1Y80_RS16290 (R1Y80_16270) - 3625885..3627246 (+) 1362 WP_354597325.1 sensor histidine kinase -
  R1Y80_RS16295 (R1Y80_16275) vraR 3627243..3627887 (+) 645 WP_354597326.1 response regulator transcription factor Regulator
  R1Y80_RS16300 (R1Y80_16280) - 3627981..3628478 (+) 498 WP_032781236.1 hypothetical protein -
  R1Y80_RS16305 (R1Y80_16285) - 3628500..3629183 (-) 684 WP_199842364.1 pentapeptide repeat-containing protein -
  R1Y80_RS16310 (R1Y80_16290) - 3629286..3630515 (+) 1230 WP_128806820.1 FAD-dependent oxidoreductase -
  R1Y80_RS16315 (R1Y80_16295) - 3630592..3631578 (+) 987 WP_354597327.1 zinc-binding dehydrogenase -
  R1Y80_RS16320 (R1Y80_16300) - 3631593..3632090 (-) 498 WP_100564811.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22685.00 Da        Isoelectric Point: 5.1332

>NTDB_id=815560 R1Y80_RS16295 WP_354597326.1 3627243..3627887(+) (vraR) [Streptomyces sp. JL1001]
MTEASPAAAPVRILLCDDHVVVRAGLLALLGSEPDIEVVGEAGSGEEAVVLAARLKPDVVLMDLQLGEGIDGVEATRRIA
ADGTVHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSAPVASRVMARMRSPRPSLTDRERDI
LAQLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 645 bp        

>NTDB_id=815560 R1Y80_RS16295 WP_354597326.1 3627243..3627887(+) (vraR) [Streptomyces sp. JL1001]
ATGACCGAGGCATCCCCGGCCGCCGCCCCCGTACGCATCCTGCTCTGCGACGACCACGTGGTCGTACGGGCCGGGCTGCT
CGCGCTCCTCGGCAGCGAACCGGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGCGAGGAGGCCGTGGTGCTCGCCGCGC
GCCTGAAGCCGGACGTCGTCCTCATGGACCTGCAACTCGGCGAGGGCATCGACGGCGTCGAGGCGACCCGCCGCATCGCG
GCCGACGGCACGGTCCACGTCCTGGTGCTGACCACGTACGACACCGACGCCGACATCACCCGGGCCATCGAGGCGGGCGC
CACCGGCTACCTGCTGAAGGCGGAACGCCCGGAGGAGCTCTTCGCCGCGATCCGGTCAGCCGCGCAGGGCCGCACCACAC
TCTCGGCCCCCGTCGCCAGCCGGGTCATGGCCCGCATGCGCAGCCCCCGCCCCAGCCTCACCGACCGCGAACGCGACATC
CTGGCCCAGCTCTCCCAGGGCCTCGGCAACCGGGACATAGCCCGCGCCCTGTTCATCAGCGAGGCCACGGTCAAGACCCA
CCTGGGCCGCATCTACGACAAGCTCGGCGTCGACACCCGGGCGGGCGCGGTGTCGGTGGCGAAGGAGCAGCGGCTGCTGC
CGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(13-125)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.614

96.729

0.383