Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | R1Y80_RS15910 | Genome accession | NZ_CP136798 |
| Coordinates | 3544810..3547338 (-) | Length | 842 a.a. |
| NCBI ID | WP_006125502.1 | Uniprot ID | A0ABT7DKM4 |
| Organism | Streptomyces sp. JL1001 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3539810..3552338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R1Y80_RS15895 (R1Y80_15875) | - | 3539968..3540681 (-) | 714 | WP_032781157.1 | M23 family metallopeptidase | - |
| R1Y80_RS15900 (R1Y80_15880) | - | 3541140..3541496 (+) | 357 | WP_032781158.1 | trypco2 family protein | - |
| R1Y80_RS15905 (R1Y80_15885) | - | 3541595..3544729 (+) | 3135 | WP_354598906.1 | NACHT domain-containing protein | - |
| R1Y80_RS15910 (R1Y80_15890) | clpC | 3544810..3547338 (-) | 2529 | WP_006125502.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| R1Y80_RS15915 (R1Y80_15895) | - | 3547789..3548403 (+) | 615 | WP_354597303.1 | SCO3374 family protein | - |
| R1Y80_RS15920 (R1Y80_15900) | - | 3548382..3548717 (-) | 336 | WP_006125504.1 | Lsr2 family protein | - |
| R1Y80_RS15925 (R1Y80_15905) | - | 3548862..3549431 (-) | 570 | WP_006125505.1 | amino-acid N-acetyltransferase | - |
| R1Y80_RS15930 (R1Y80_15910) | - | 3549441..3549923 (-) | 483 | WP_354597304.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| R1Y80_RS15935 (R1Y80_15915) | - | 3550054..3550233 (-) | 180 | WP_032766489.1 | hypothetical protein | - |
| R1Y80_RS15940 (R1Y80_15920) | - | 3550316..3550900 (-) | 585 | WP_100564760.1 | hypothetical protein | - |
| R1Y80_RS15945 (R1Y80_15925) | - | 3551062..3551859 (-) | 798 | WP_006125509.1 | type III pantothenate kinase | - |
Sequence
Protein
Download Length: 842 a.a. Molecular weight: 93067.33 Da Isoelectric Point: 5.9165
>NTDB_id=815558 R1Y80_RS15910 WP_006125502.1 3544810..3547338(-) (clpC) [Streptomyces sp. JL1001]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSGGKETAAAGGPAEG
TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGEL
IAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILE
DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDVKTNYERMKVKVNEELKQHFRPEFLNRVDDTVVFHQL
TEEDIIQIVDLMLAKVDERLKDRDMGIELSGEAKTLLAKKGYDPVMGARPLRRTIQRQIEDVLSEKILFGELRPGHIVVV
GTEGEGDDKTFTFRGEEKSALPDVPPIEQAAGGAGPNLTKDA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYSGGKETAAAGGPAEG
TPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLK
DKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT
TLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLI
DEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGEL
IAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELS
KTLAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILE
DGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDVKTNYERMKVKVNEELKQHFRPEFLNRVDDTVVFHQL
TEEDIIQIVDLMLAKVDERLKDRDMGIELSGEAKTLLAKKGYDPVMGARPLRRTIQRQIEDVLSEKILFGELRPGHIVVV
GTEGEGDDKTFTFRGEEKSALPDVPPIEQAAGGAGPNLTKDA
Nucleotide
Download Length: 2529 bp
>NTDB_id=815558 R1Y80_RS15910 WP_006125502.1 3544810..3547338(-) (clpC) [Streptomyces sp. JL1001]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGGCAGGGGCAGCAGGCTCCTTCCGGGCACATCCCCTTC
ACCCCGCGAGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGACCTGAACCGGG
TCCGGCAGCAGGTCATCCAGCTGCTTTCCGGGTACTCGGGCGGCAAGGAGACGGCGGCCGCGGGCGGCCCCGCCGAGGGC
ACGCCCTCCACGTCCCTGGTGCTCGACCAGTTCGGCCGGAATCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACCAAGAACAACCCCGTCCTCATCGGCG
AGCCCGGTGTCGGCAAGACGGCGGTCGTCGAGGGCCTGGCCCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG
GACAAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGTTCGCGATACCGGGGTGACTTCGAGGAGCGCCTGAA
GAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTCCACACCCTGGTCGGTGCGGGCG
CCGCCGAGGGCGCGATCGATGCGGCGAGCATCCTCAAGCCCATGCTGGCGCGAGGCGAGCTCCAGACCATCGGCGCCACG
ACGCTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCCGCTCTTGAGCGCCGCTTCCAGCCCATCCAGGTCGCGGAGCC
GTCGCTGCCGCACACCATCGAGATCCTCAAGGGTCTGCGCGACCGTTACGAGGCCCACCACCGGGTCTCCATCACGGACG
AGGCCCTCGTCCAGGCCGCGACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATC
GACGAGGCCGGCTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCGGG
TGTCCGCCGCGACAAGGAGTCGGCCATCGACTCCCAGGACTTCGAGAAGGCGGCCTCCCTCCGCGACAAGGAGAAGCAGC
TGCTGGCGGCGAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTG
ATCGCCGAGGTCCTGGCCACCGCCACCGGCATCCCGGTCTTCAAGCTGACGGAGGAGGAGTCCTCCCGTCTGCTGCGCAT
GGAGGACGAGCTCCACAAGCGCGTCATCGGCCAGAAGGACGCCATCAAGGCCCTCTCGCAGGCGATCCGCCGTACGCGAG
CCGGCCTGAAGGACCCGAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACGGAGCTGTCC
AAGACGCTCGCCGAATTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACAC
GGTTTCCCGCCTCTTCGGTTCGCCCCCCGGTTACGTGGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA
AGCCGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCCGATATCTTCAATTCCCTGCTCCAGATTCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGGAC
CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCCAGGGCGACGTCAAGACCAACTACGAGCGCATGAAGGTCA
AGGTCAACGAAGAGCTCAAGCAGCACTTCCGGCCGGAATTCCTCAACCGTGTCGACGACACGGTGGTCTTCCACCAGCTG
ACCGAGGAAGACATCATCCAGATCGTCGACCTCATGCTCGCCAAGGTCGACGAGCGTCTCAAGGACCGCGACATGGGCAT
CGAGCTCAGCGGCGAGGCCAAGACGCTGCTCGCGAAGAAGGGCTACGACCCCGTGATGGGCGCCCGGCCGCTGCGCCGGA
CGATCCAGCGGCAGATCGAGGACGTCCTCTCCGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGTCACATCGTGGTCGTG
GGCACGGAGGGCGAGGGCGACGACAAGACGTTCACCTTCCGCGGCGAGGAGAAGTCGGCTCTGCCCGACGTCCCCCCGAT
CGAGCAGGCGGCAGGCGGCGCCGGCCCGAACCTGACGAAGGACGCGTGA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGGCAGGGGCAGCAGGCTCCTTCCGGGCACATCCCCTTC
ACCCCGCGAGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGACCTGAACCGGG
TCCGGCAGCAGGTCATCCAGCTGCTTTCCGGGTACTCGGGCGGCAAGGAGACGGCGGCCGCGGGCGGCCCCGCCGAGGGC
ACGCCCTCCACGTCCCTGGTGCTCGACCAGTTCGGCCGGAATCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGT
CATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACCAAGAACAACCCCGTCCTCATCGGCG
AGCCCGGTGTCGGCAAGACGGCGGTCGTCGAGGGCCTGGCCCAGGCGATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAG
GACAAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGTTCGCGATACCGGGGTGACTTCGAGGAGCGCCTGAA
GAAGGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTCCACACCCTGGTCGGTGCGGGCG
CCGCCGAGGGCGCGATCGATGCGGCGAGCATCCTCAAGCCCATGCTGGCGCGAGGCGAGCTCCAGACCATCGGCGCCACG
ACGCTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCCGCTCTTGAGCGCCGCTTCCAGCCCATCCAGGTCGCGGAGCC
GTCGCTGCCGCACACCATCGAGATCCTCAAGGGTCTGCGCGACCGTTACGAGGCCCACCACCGGGTCTCCATCACGGACG
AGGCCCTCGTCCAGGCCGCGACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATC
GACGAGGCCGGCTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCGGG
TGTCCGCCGCGACAAGGAGTCGGCCATCGACTCCCAGGACTTCGAGAAGGCGGCCTCCCTCCGCGACAAGGAGAAGCAGC
TGCTGGCGGCGAAGGCCAAGCGGGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTG
ATCGCCGAGGTCCTGGCCACCGCCACCGGCATCCCGGTCTTCAAGCTGACGGAGGAGGAGTCCTCCCGTCTGCTGCGCAT
GGAGGACGAGCTCCACAAGCGCGTCATCGGCCAGAAGGACGCCATCAAGGCCCTCTCGCAGGCGATCCGCCGTACGCGAG
CCGGCCTGAAGGACCCGAAGCGCCCCGGTGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACGGAGCTGTCC
AAGACGCTCGCCGAATTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACAC
GGTTTCCCGCCTCTTCGGTTCGCCCCCCGGTTACGTGGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA
AGCCGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCCGATATCTTCAATTCCCTGCTCCAGATTCTGGAG
GACGGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGGAC
CCGGGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCCAGGGCGACGTCAAGACCAACTACGAGCGCATGAAGGTCA
AGGTCAACGAAGAGCTCAAGCAGCACTTCCGGCCGGAATTCCTCAACCGTGTCGACGACACGGTGGTCTTCCACCAGCTG
ACCGAGGAAGACATCATCCAGATCGTCGACCTCATGCTCGCCAAGGTCGACGAGCGTCTCAAGGACCGCGACATGGGCAT
CGAGCTCAGCGGCGAGGCCAAGACGCTGCTCGCGAAGAAGGGCTACGACCCCGTGATGGGCGCCCGGCCGCTGCGCCGGA
CGATCCAGCGGCAGATCGAGGACGTCCTCTCCGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGTCACATCGTGGTCGTG
GGCACGGAGGGCGAGGGCGACGACAAGACGTTCACCTTCCGCGGCGAGGAGAAGTCGGCTCTGCCCGACGTCCCCCCGAT
CGAGCAGGCGGCAGGCGGCGCCGGCCCGAACCTGACGAAGGACGCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.663 |
95.724 |
0.59 |
| clpC | Streptococcus mutans UA159 |
44.578 |
98.575 |
0.439 |
| clpC | Streptococcus thermophilus LMD-9 |
43.623 |
99.644 |
0.435 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.571 |
99.762 |
0.435 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.995 |
96.912 |
0.426 |
| clpC | Streptococcus pneumoniae D39 |
43.905 |
95.487 |
0.419 |
| clpC | Streptococcus pneumoniae Rx1 |
43.905 |
95.487 |
0.419 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.657 |
95.487 |
0.417 |
| clpE | Streptococcus mutans UA159 |
53.994 |
74.347 |
0.401 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.201 |
75.534 |
0.394 |
| clpE | Streptococcus pneumoniae Rx1 |
52.044 |
75.534 |
0.393 |
| clpE | Streptococcus pneumoniae D39 |
52.044 |
75.534 |
0.393 |
| clpE | Streptococcus pneumoniae R6 |
52.044 |
75.534 |
0.393 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.326 |
76.128 |
0.391 |