Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   R1Y80_RS07380 Genome accession   NZ_CP136798
Coordinates   1637558..1640581 (-) Length   1007 a.a.
NCBI ID   WP_354596639.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632558..1645581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS07360 (R1Y80_07345) - 1633963..1634931 (-) 969 WP_100565083.1 hypothetical protein -
  R1Y80_RS07365 (R1Y80_07350) - 1634936..1635571 (-) 636 WP_354596638.1 papain-like cysteine protease family protein -
  R1Y80_RS07370 (R1Y80_07355) - 1635799..1636731 (+) 933 WP_100565082.1 hypothetical protein -
  R1Y80_RS07375 (R1Y80_07360) - 1636770..1637198 (-) 429 WP_006123693.1 Rieske (2Fe-2S) protein -
  R1Y80_RS07380 (R1Y80_07365) uvrA 1637558..1640581 (-) 3024 WP_354596639.1 excinuclease ABC subunit UvrA Machinery gene
  R1Y80_RS07385 (R1Y80_07370) - 1640757..1641446 (+) 690 WP_093444537.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  R1Y80_RS07390 (R1Y80_07375) - 1641457..1642113 (+) 657 WP_100565080.1 MBL fold metallo-hydrolase -
  R1Y80_RS07395 (R1Y80_07380) - 1642289..1643305 (-) 1017 WP_100565079.1 TerC family protein -
  R1Y80_RS07400 (R1Y80_07385) - 1643548..1645542 (-) 1995 WP_354596640.1 TerD family protein -

Sequence

Protein


Download         Length: 1007 a.a.        Molecular weight: 110178.34 Da        Isoelectric Point: 7.7155

>NTDB_id=815540 R1Y80_RS07380 WP_354596639.1 1637558..1640581(-) (uvrA) [Streptomyces sp. JL1001]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECRRPISRQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLAEPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRLIGALAEALGFRTDIPWAGLPQRAKKALLFGHKIQTEVRYRNRYGRERAYTTPAFEGAVQFVKRRHTEAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMERSIAEVAAMSISECAEFLGRLKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLGNKASVTGQYLSGKRSIPTPDVRRPVDPARGLTVHGARENNLQDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPAIARHLRTLNDVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLITVL
SGLVDKGNSVIVIEHNLDVIKTADWVVDMGPEGGNGGGLVVAEGTPEQVASVPASHTGKFLQSILDADRIAEAAVPSGGT
PRKTAARKAAPAKKTAAAKKATATKAKATATGTKAAAAKKTTRARKA

Nucleotide


Download         Length: 3024 bp        

>NTDB_id=815540 R1Y80_RS07380 WP_354596639.1 1637558..1640581(-) (uvrA) [Streptomyces sp. JL1001]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAACGTCTCGCTCGACCTGCCCCGCGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCGTCCCTCGCGTTCGACACGATCTTCGCCGAGGGGCAGCGCCGCT
ACGTGGAGTCCCTCTCCTCGTACGCCCGCCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAAGGTCTG
TCCCCGGCTGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACGGAGGTCTACGA
CTACCTCCGGCTGCTCTTCGCCCGGATCGGCAAGCCGCACTGCCCCGAGTGCCGCCGCCCCATCTCCCGCCAGTCGCCGC
AGGCCATCGTCGACAAGGTCCTCGGCCTGCCCGAGGGCAGCCGCTTCCAGGTCCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGAGAGTTCGTCGACCTCTTCGCCGATCTCCAGACCAAGGGCTACAGCCGGGCCCGGGTCGACGGCGAGACCATCCAGCT
CGCCGAGCCGCCCACGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACCGTCAAGGACAGCG
CCAAGCGCCGGCTGACCGACTCGGTCGAGACCGCGCTCGGTCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGGATGTATTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACCGGCATCGGGACGCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCGGACGAGGAGAAGTCCCTCGACGAGGGAGCCATCCACCCCTGGTCCCACGGGCACACCAAG
GAGTATTTCGGCCGACTGATCGGCGCGCTCGCCGAAGCTCTCGGCTTCCGTACGGACATCCCCTGGGCCGGACTGCCGCA
GCGGGCCAAGAAGGCCCTGCTCTTCGGCCACAAGATCCAGACCGAAGTCCGCTACCGCAACCGCTACGGGCGCGAGCGCG
CCTACACCACCCCCGCCTTCGAGGGCGCGGTGCAGTTCGTCAAGCGGCGGCACACCGAGGCCGAGAGCGACTCCAGCCGG
GAGCGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCACCTGTGAGGGCACCCGGCTCAAGCCGATCGTCCTCGCGGT
GACGGTGATGGAGAGGTCCATCGCCGAGGTCGCCGCGATGTCGATCAGCGAGTGCGCCGAGTTCCTCGGCCGCCTCAAGC
TGAACGCCCGCGACAAGAAGATCGCCGAGCGGGTGCTCAAGGAGGTCAACGAACGGCTGAAGTTCCTGGTGGACGTCGGC
CTGGACTACCTCTCGCTGAACCGCGCGGCCGGCACCCTGTCCGGCGGCGAGGCCCAGCGCATCCGGCTGGCCACGCAGAT
CGGCTCCGGCCTGGTCGGCGTGCTGTACGTCCTGGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGA
TCGAAACCCTGGTCCGGCTGCGGGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCC
GACTGGGTCGTGGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTCGTCCACTCCGGCTCGCTCAAGGAGCTGCT
GGGGAACAAGGCCTCGGTCACCGGCCAGTATCTGTCCGGCAAGCGGTCCATCCCGACCCCGGACGTCCGCCGCCCGGTCG
ACCCGGCCCGGGGCCTCACCGTGCACGGCGCCCGGGAGAACAACCTCCAGGACATCGACGTCTCCTTCCCGCTCGGCGTC
CTCACCGCCGTCACCGGCGTCTCCGGCTCCGGGAAGTCGACCCTGGTCAACGACATCCTCTACACCCACCTGGCCCGCGA
GCTCAACGGCGCCAAGTCGGTGCCCGGCCGCCACACCCGGGTCGACGGCGACGACCTCGTCGACAAGGTGGTCCACGTCG
ACCAGTCGCCGATCGGCCGGACCCCCCGGTCCAACCCGGCGACGTACACCGGAGTCTTCGACCACGTCCGCAAGCTGTTC
GCCGAGACGATGGAGGCGAAGGTGCGCGGCTATCTGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGTCGCTGCGAGAA
CTGCTCCGGTGACGGCACGATCAAGATCGAGATGAACTTCCTGCCCGACGTGTACGTCCCGTGCGAGGTCTGCCACGGAG
CGCGCTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGGACATGCCGATCGAGGAG
GGCCTGGAGTTCTTCGAGGCCGTCCCGGCGATCGCCCGCCACCTCCGTACGCTCAACGACGTCGGCCTCGGCTACGTCCG
GCTCGGGCAGTCCGCGCCGACCCTCTCCGGCGGTGAGGCGCAGCGCGTCAAGCTGGCGAGCGAGCTCCAGAAGCGCTCCA
CCGGCCGTACGGTCTACGTCCTGGACGAGCCGACCACCGGTCTGCACTTCGAGGACATCAGCAAGCTGATCACGGTGCTC
TCGGGCCTCGTGGACAAGGGCAACTCGGTGATCGTCATCGAGCACAACCTCGACGTCATCAAGACCGCCGACTGGGTGGT
CGACATGGGCCCCGAGGGCGGCAACGGCGGCGGACTGGTCGTCGCCGAGGGAACACCGGAGCAGGTCGCCTCGGTGCCCG
CCAGCCACACCGGGAAGTTCCTCCAGTCCATCCTGGACGCGGACCGGATCGCCGAAGCCGCGGTGCCCTCGGGCGGGACA
CCCCGTAAGACGGCCGCCCGCAAGGCCGCCCCGGCGAAGAAGACGGCAGCCGCCAAGAAGGCCACGGCGACCAAGGCGAA
GGCCACGGCCACCGGCACCAAGGCCGCTGCCGCCAAGAAGACGACCCGGGCCCGCAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

ABC transporter (ABC_tran)

(629-865)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.375

94.24

0.531
  uvrA Streptococcus pneumoniae TIGR4

56.375

94.24

0.531
  uvrA Streptococcus pneumoniae D39

56.375

94.24

0.531