Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R1Y80_RS05070 Genome accession   NZ_CP136798
Coordinates   1155223..1156590 (-) Length   455 a.a.
NCBI ID   WP_354596499.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1150223..1161590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS05045 (R1Y80_05030) - 1150432..1150779 (-) 348 WP_128807247.1 DUF6167 family protein -
  R1Y80_RS05050 (R1Y80_05035) - 1150787..1151242 (-) 456 WP_032768154.1 DUF948 domain-containing protein -
  R1Y80_RS05055 (R1Y80_05040) - 1151463..1153676 (+) 2214 WP_354596497.1 AAA family ATPase -
  R1Y80_RS05060 (R1Y80_05045) rpsD 1153694..1154308 (-) 615 WP_006123201.1 30S ribosomal protein S4 -
  R1Y80_RS05065 (R1Y80_05050) - 1154500..1155201 (+) 702 WP_354596498.1 DUF2470 domain-containing protein -
  R1Y80_RS05070 (R1Y80_05055) rarA 1155223..1156590 (-) 1368 WP_354596499.1 replication-associated recombination protein A Machinery gene
  R1Y80_RS05075 (R1Y80_05060) - 1156646..1157284 (-) 639 WP_032768150.1 vitamin K epoxide reductase family protein -
  R1Y80_RS05080 (R1Y80_05065) - 1157421..1158278 (+) 858 WP_106969631.1 ABC transporter ATP-binding protein -
  R1Y80_RS05085 (R1Y80_05070) - 1158275..1159096 (+) 822 WP_354596500.1 ABC transporter permease -
  R1Y80_RS05090 (R1Y80_05075) - 1159054..1160316 (+) 1263 WP_354596501.1 sensor histidine kinase -
  R1Y80_RS05095 (R1Y80_05080) vraR 1160316..1160936 (+) 621 WP_032780914.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48506.84 Da        Isoelectric Point: 5.9906

>NTDB_id=815534 R1Y80_RS05070 WP_354596499.1 1155223..1156590(-) (rarA) [Streptomyces sp. JL1001]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLEPLTDDDLRSLLRRALTEERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAAIATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVTSALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALILSHATIALALAPKSNAATLAISAAQDDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRQYYTPTRYGAEARYADVVERVRERLGRAGEGGEQE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=815534 R1Y80_RS05070 WP_354596499.1 1155223..1156590(-) (rarA) [Streptomyces sp. JL1001]
GTGGAGCCCGACCTGTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCCCGTACTCTCGACGAGGTCGTCGGCCAGCAGCATCTTCTGAAGCCGGGCTCGCCCCTGCGCCGCCTCGTCGGCG
ACGGGGGCGGTCCGGCGGGGGCGTCCTCCGTCATTCTGTGGGGCCCGCCCGGCACCGGCAAGACGACCCTGGCGTACGTG
GTCAGCAAAGCCACCAACAAGCGTTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCCGTCATCGA
GAGCGCGCGTCGCGCCACCGGTGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTCCTCCCCGCCGTCGAGAACCGCTGGGTGACGCTCATCGCCGCCACCACGGAGAATCCGTACTTCTCG
ATCATCTCCCCGCTGCTGTCGCGCTCCCTGCTGCTCACTCTGGAGCCGCTGACCGACGACGACCTGCGCTCCCTGCTGCG
CCGGGCGCTGACCGAGGAGCGGGGGCTCGGCGGGGCGGTCACCCTGCCCGAGGACGCCGAGGCGCATCTGCTGCGGATCG
CCGGCGGCGATGCGCGCCGGGCGCTCACCGCGCTGGAGGCCGCCGCCGGTGCGGCCATCGCCACGCACGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCGACCGTCGACCGGGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGTGAC
CAGCGCGCTCATCAAGTCGATCCGGGGTTCCGACGTGGACGCGGCACTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGATCCCACCGCGCTGCCG
ACGGCGGTGGCGGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTTATCCTCAGCCACGCCACCATCGC
GCTGGCGCTCGCTCCCAAGTCCAACGCGGCGACGCTGGCGATCTCCGCCGCGCAGGACGATGTGCGCAGAGGACTGGCCG
GACCCGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CACGATGTGCAGGGCGGCATCGCCGCCCAGCAGTATGCCCCGGACGCCGTCCGCGACCGGCAGTACTACACACCCACCCG
CTACGGCGCCGAGGCGCGGTACGCGGACGTCGTCGAGCGCGTCCGCGAGCGCCTCGGCCGCGCCGGCGAGGGCGGCGAGC
AGGAGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

AAA C-terminal domain (AAA_assoc_2)

(199-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.548

94.725

0.422