Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | R1Y80_RS02795 | Genome accession | NZ_CP136798 |
| Coordinates | 597982..600510 (-) | Length | 842 a.a. |
| NCBI ID | WP_100560972.1 | Uniprot ID | - |
| Organism | Streptomyces sp. JL1001 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 592982..605510
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R1Y80_RS02775 (R1Y80_02770) | - | 593655..595979 (+) | 2325 | WP_354596305.1 | FdhF/YdeP family oxidoreductase | - |
| R1Y80_RS02780 (R1Y80_02775) | fdhD | 595967..596827 (+) | 861 | WP_100560970.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| R1Y80_RS02785 (R1Y80_02780) | - | 596864..597781 (+) | 918 | WP_354596306.1 | LysR family transcriptional regulator | - |
| R1Y80_RS02790 (R1Y80_02785) | - | 597802..597978 (-) | 177 | WP_006122695.1 | hypothetical protein | - |
| R1Y80_RS02795 (R1Y80_02790) | clpC | 597982..600510 (-) | 2529 | WP_100560972.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| R1Y80_RS02800 (R1Y80_02795) | - | 600611..602335 (-) | 1725 | WP_128807933.1 | acyl-CoA dehydrogenase family protein | - |
| R1Y80_RS02805 (R1Y80_02800) | - | 602401..602964 (-) | 564 | WP_100560974.1 | PadR family transcriptional regulator | - |
| R1Y80_RS02810 (R1Y80_02805) | - | 603222..603398 (+) | 177 | Protein_561 | NADPH-dependent oxidoreductase | - |
| R1Y80_RS02815 (R1Y80_02810) | - | 603430..604164 (-) | 735 | WP_093438878.1 | GAF and ANTAR domain-containing protein | - |
| R1Y80_RS02820 (R1Y80_02815) | - | 604709..605185 (-) | 477 | WP_100560976.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 842 a.a. Molecular weight: 90945.15 Da Isoelectric Point: 4.6066
>NTDB_id=815529 R1Y80_RS02795 WP_100560972.1 597982..600510(-) (clpC) [Streptomyces sp. JL1001]
MSMAFGSPLGPSDPFSDLLNRFFGMSPASSPPAMQRVPIGRLLTESSHELLGRATSKAAEDGTADLDTEHLLWAATQVEP
SRGLLSRAGVDPDALAAQLDEVLPRESAEPSAEPGLTPAAKRTLTAAYARSQAAGVSYIGPEHILGALIDDADSGAGRFL
GSDDLDVGKLRGAADRAAGPEGAAGGAKQPATTLDEFGRDLTEEAKAGKLDPVVGRAEEIEQTIEILSRRSKNNPVLIGE
PGVGKTAIVEGLAQSIVAGEVPDTLKDKRVVSLDLSGMVAGAQYRGQFEERLKKVIEDVQKAEGEIILFIDELHTVVGAG
ATGEGSMDAGNMLKPALARGELHVVGATTIDEYRKHIEKDAALERRFQPVLVPEPTVEETVQILEGLRDAYEAHHQVRFA
DGALTAAAELSDRYISDRFLPDKAIDLMDQAGARVRLRSANRSTEVVSREDRLAKLRREKDEAVAGEAFEKASDLKRQIA
EVEGELAGIEERREGVVSVTSSDIADIVSRRTGIPVSQLTAGEKEKLLKLEEEMHARIVGQDEAVTAVSEAVRRNRAGMG
DPNRPVGSFLFLGPTGVGKTELAKTLAELLFGQDDRMIRFDMSEFQEKHTVARLVGAPPGYVGYDEAGQLTEKVRRNPYS
VVLFDEVEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVIMTSNIGAHRILAHEGDAAELKDELMEDLRGRFLPEFL
NRIDDIIVFHSLTENDLSEIVDHLLDRSKHRVHAQGMTLEVTEAAKKLLVAHGYQPEFGARPLRRTIQTELDNRVASLLL
GGEADPGDTIVADVVDDSLHCTIRKGDGDGETPAADTPDGEE
MSMAFGSPLGPSDPFSDLLNRFFGMSPASSPPAMQRVPIGRLLTESSHELLGRATSKAAEDGTADLDTEHLLWAATQVEP
SRGLLSRAGVDPDALAAQLDEVLPRESAEPSAEPGLTPAAKRTLTAAYARSQAAGVSYIGPEHILGALIDDADSGAGRFL
GSDDLDVGKLRGAADRAAGPEGAAGGAKQPATTLDEFGRDLTEEAKAGKLDPVVGRAEEIEQTIEILSRRSKNNPVLIGE
PGVGKTAIVEGLAQSIVAGEVPDTLKDKRVVSLDLSGMVAGAQYRGQFEERLKKVIEDVQKAEGEIILFIDELHTVVGAG
ATGEGSMDAGNMLKPALARGELHVVGATTIDEYRKHIEKDAALERRFQPVLVPEPTVEETVQILEGLRDAYEAHHQVRFA
DGALTAAAELSDRYISDRFLPDKAIDLMDQAGARVRLRSANRSTEVVSREDRLAKLRREKDEAVAGEAFEKASDLKRQIA
EVEGELAGIEERREGVVSVTSSDIADIVSRRTGIPVSQLTAGEKEKLLKLEEEMHARIVGQDEAVTAVSEAVRRNRAGMG
DPNRPVGSFLFLGPTGVGKTELAKTLAELLFGQDDRMIRFDMSEFQEKHTVARLVGAPPGYVGYDEAGQLTEKVRRNPYS
VVLFDEVEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVIMTSNIGAHRILAHEGDAAELKDELMEDLRGRFLPEFL
NRIDDIIVFHSLTENDLSEIVDHLLDRSKHRVHAQGMTLEVTEAAKKLLVAHGYQPEFGARPLRRTIQTELDNRVASLLL
GGEADPGDTIVADVVDDSLHCTIRKGDGDGETPAADTPDGEE
Nucleotide
Download Length: 2529 bp
>NTDB_id=815529 R1Y80_RS02795 WP_100560972.1 597982..600510(-) (clpC) [Streptomyces sp. JL1001]
ATGTCGATGGCGTTCGGTTCACCCCTCGGTCCGTCCGATCCGTTCAGCGATCTGCTGAACCGGTTCTTCGGTATGTCGCC
CGCCTCCTCGCCCCCCGCGATGCAGCGCGTCCCGATCGGGCGGCTGCTGACGGAGTCCTCCCACGAGTTGCTGGGCCGGG
CGACGAGCAAGGCGGCCGAGGACGGCACCGCGGACCTCGACACCGAGCATCTGCTGTGGGCGGCGACCCAGGTCGAGCCC
TCGCGCGGGCTGCTGTCCCGCGCGGGGGTCGACCCCGACGCGCTCGCCGCGCAGCTCGACGAGGTGCTGCCCCGGGAGTC
CGCCGAGCCCTCCGCCGAGCCCGGGCTCACCCCGGCGGCGAAGCGGACCCTCACCGCCGCCTACGCCCGCTCGCAGGCGG
CCGGGGTGTCCTACATCGGGCCCGAGCACATCCTCGGCGCGCTCATCGACGACGCGGACTCCGGGGCCGGGCGGTTCCTG
GGGTCGGACGACCTCGACGTGGGGAAGCTGCGCGGCGCGGCCGACCGGGCGGCGGGGCCGGAAGGGGCCGCCGGCGGGGC
CAAGCAGCCTGCGACGACCCTGGACGAGTTCGGCCGGGACCTCACGGAGGAGGCGAAGGCGGGGAAGCTCGACCCCGTGG
TCGGGCGGGCCGAGGAGATCGAGCAGACCATCGAGATCCTCTCGCGGCGCTCCAAGAACAACCCCGTCCTCATCGGCGAG
CCCGGCGTCGGCAAGACCGCCATCGTCGAGGGACTGGCCCAGAGCATCGTCGCGGGCGAGGTCCCCGACACCCTCAAGGA
CAAACGGGTCGTCTCCCTGGACCTGTCCGGCATGGTCGCCGGAGCCCAGTACCGCGGCCAGTTCGAGGAGCGGCTGAAGA
AGGTCATCGAAGACGTCCAGAAGGCCGAGGGGGAGATCATCCTCTTCATCGACGAACTCCACACCGTCGTCGGCGCGGGC
GCCACGGGCGAGGGCTCCATGGACGCGGGCAACATGCTCAAGCCCGCCCTCGCCCGCGGGGAGCTGCACGTCGTCGGCGC
GACGACGATCGACGAGTACCGCAAGCACATCGAGAAGGACGCCGCCCTGGAGCGCCGCTTCCAGCCCGTCCTGGTGCCGG
AGCCCACCGTCGAGGAGACCGTACAGATCCTCGAAGGGCTGCGCGACGCCTACGAGGCCCACCACCAGGTCCGCTTCGCC
GACGGAGCCCTCACGGCCGCCGCCGAACTGTCCGACCGCTACATCAGCGACCGCTTCCTGCCCGACAAGGCCATCGACCT
GATGGACCAGGCCGGGGCCCGCGTACGGCTGCGCAGCGCGAACCGCTCCACCGAGGTCGTCAGCCGCGAGGACCGCCTCG
CGAAACTGCGGCGCGAGAAGGACGAGGCCGTCGCGGGCGAGGCGTTCGAGAAGGCGTCGGACCTGAAGCGGCAGATCGCC
GAGGTCGAAGGAGAACTGGCCGGGATCGAGGAGCGCCGCGAGGGCGTCGTCTCGGTCACCTCCTCCGACATCGCCGACAT
CGTCTCCCGCCGCACCGGTATCCCCGTCTCCCAGCTCACCGCCGGCGAGAAGGAGAAGCTCCTCAAGCTGGAGGAGGAGA
TGCACGCCCGGATCGTCGGCCAGGACGAGGCCGTCACCGCGGTCTCCGAAGCCGTACGCCGCAACCGCGCCGGCATGGGC
GACCCGAACCGGCCCGTCGGCTCGTTCCTCTTCCTCGGCCCCACCGGCGTCGGCAAGACGGAGCTGGCCAAGACGCTCGC
CGAGCTGCTGTTCGGCCAGGACGACCGCATGATCCGCTTCGACATGAGCGAGTTCCAGGAGAAGCACACCGTCGCCCGGC
TCGTCGGCGCGCCTCCCGGATACGTCGGTTACGACGAGGCCGGCCAGCTCACCGAGAAGGTCCGGCGCAACCCCTACAGC
GTCGTCCTGTTCGACGAGGTCGAGAAGGCGCACCCCGATGTCTTCAACACGCTGCTCCAGATTCTCGACGACGGCCGCCT
CACCGACGGACAGGGCCGCACCGTCGACTTCCGGCACTGCGTCGTCATCATGACGTCCAACATCGGCGCCCACCGCATCC
TCGCCCACGAGGGCGACGCCGCCGAGCTCAAGGACGAGCTGATGGAGGACCTGCGCGGCCGGTTCCTCCCCGAGTTCCTC
AACCGCATCGACGACATCATCGTCTTCCACAGCCTCACCGAGAACGACCTGTCCGAGATCGTCGATCACCTCCTGGACCG
CAGCAAGCACCGCGTCCACGCCCAGGGCATGACCCTGGAGGTCACCGAGGCGGCGAAGAAACTCCTGGTCGCGCACGGCT
ACCAGCCGGAGTTCGGCGCCCGCCCGCTGCGCCGCACGATCCAGACGGAACTGGACAACCGCGTCGCCTCCCTGCTGCTC
GGCGGCGAAGCCGACCCCGGGGACACGATCGTCGCCGACGTGGTCGACGACTCCCTGCACTGCACCATCCGCAAGGGCGA
CGGCGACGGGGAGACCCCCGCCGCCGACACCCCCGACGGCGAGGAGTGA
ATGTCGATGGCGTTCGGTTCACCCCTCGGTCCGTCCGATCCGTTCAGCGATCTGCTGAACCGGTTCTTCGGTATGTCGCC
CGCCTCCTCGCCCCCCGCGATGCAGCGCGTCCCGATCGGGCGGCTGCTGACGGAGTCCTCCCACGAGTTGCTGGGCCGGG
CGACGAGCAAGGCGGCCGAGGACGGCACCGCGGACCTCGACACCGAGCATCTGCTGTGGGCGGCGACCCAGGTCGAGCCC
TCGCGCGGGCTGCTGTCCCGCGCGGGGGTCGACCCCGACGCGCTCGCCGCGCAGCTCGACGAGGTGCTGCCCCGGGAGTC
CGCCGAGCCCTCCGCCGAGCCCGGGCTCACCCCGGCGGCGAAGCGGACCCTCACCGCCGCCTACGCCCGCTCGCAGGCGG
CCGGGGTGTCCTACATCGGGCCCGAGCACATCCTCGGCGCGCTCATCGACGACGCGGACTCCGGGGCCGGGCGGTTCCTG
GGGTCGGACGACCTCGACGTGGGGAAGCTGCGCGGCGCGGCCGACCGGGCGGCGGGGCCGGAAGGGGCCGCCGGCGGGGC
CAAGCAGCCTGCGACGACCCTGGACGAGTTCGGCCGGGACCTCACGGAGGAGGCGAAGGCGGGGAAGCTCGACCCCGTGG
TCGGGCGGGCCGAGGAGATCGAGCAGACCATCGAGATCCTCTCGCGGCGCTCCAAGAACAACCCCGTCCTCATCGGCGAG
CCCGGCGTCGGCAAGACCGCCATCGTCGAGGGACTGGCCCAGAGCATCGTCGCGGGCGAGGTCCCCGACACCCTCAAGGA
CAAACGGGTCGTCTCCCTGGACCTGTCCGGCATGGTCGCCGGAGCCCAGTACCGCGGCCAGTTCGAGGAGCGGCTGAAGA
AGGTCATCGAAGACGTCCAGAAGGCCGAGGGGGAGATCATCCTCTTCATCGACGAACTCCACACCGTCGTCGGCGCGGGC
GCCACGGGCGAGGGCTCCATGGACGCGGGCAACATGCTCAAGCCCGCCCTCGCCCGCGGGGAGCTGCACGTCGTCGGCGC
GACGACGATCGACGAGTACCGCAAGCACATCGAGAAGGACGCCGCCCTGGAGCGCCGCTTCCAGCCCGTCCTGGTGCCGG
AGCCCACCGTCGAGGAGACCGTACAGATCCTCGAAGGGCTGCGCGACGCCTACGAGGCCCACCACCAGGTCCGCTTCGCC
GACGGAGCCCTCACGGCCGCCGCCGAACTGTCCGACCGCTACATCAGCGACCGCTTCCTGCCCGACAAGGCCATCGACCT
GATGGACCAGGCCGGGGCCCGCGTACGGCTGCGCAGCGCGAACCGCTCCACCGAGGTCGTCAGCCGCGAGGACCGCCTCG
CGAAACTGCGGCGCGAGAAGGACGAGGCCGTCGCGGGCGAGGCGTTCGAGAAGGCGTCGGACCTGAAGCGGCAGATCGCC
GAGGTCGAAGGAGAACTGGCCGGGATCGAGGAGCGCCGCGAGGGCGTCGTCTCGGTCACCTCCTCCGACATCGCCGACAT
CGTCTCCCGCCGCACCGGTATCCCCGTCTCCCAGCTCACCGCCGGCGAGAAGGAGAAGCTCCTCAAGCTGGAGGAGGAGA
TGCACGCCCGGATCGTCGGCCAGGACGAGGCCGTCACCGCGGTCTCCGAAGCCGTACGCCGCAACCGCGCCGGCATGGGC
GACCCGAACCGGCCCGTCGGCTCGTTCCTCTTCCTCGGCCCCACCGGCGTCGGCAAGACGGAGCTGGCCAAGACGCTCGC
CGAGCTGCTGTTCGGCCAGGACGACCGCATGATCCGCTTCGACATGAGCGAGTTCCAGGAGAAGCACACCGTCGCCCGGC
TCGTCGGCGCGCCTCCCGGATACGTCGGTTACGACGAGGCCGGCCAGCTCACCGAGAAGGTCCGGCGCAACCCCTACAGC
GTCGTCCTGTTCGACGAGGTCGAGAAGGCGCACCCCGATGTCTTCAACACGCTGCTCCAGATTCTCGACGACGGCCGCCT
CACCGACGGACAGGGCCGCACCGTCGACTTCCGGCACTGCGTCGTCATCATGACGTCCAACATCGGCGCCCACCGCATCC
TCGCCCACGAGGGCGACGCCGCCGAGCTCAAGGACGAGCTGATGGAGGACCTGCGCGGCCGGTTCCTCCCCGAGTTCCTC
AACCGCATCGACGACATCATCGTCTTCCACAGCCTCACCGAGAACGACCTGTCCGAGATCGTCGATCACCTCCTGGACCG
CAGCAAGCACCGCGTCCACGCCCAGGGCATGACCCTGGAGGTCACCGAGGCGGCGAAGAAACTCCTGGTCGCGCACGGCT
ACCAGCCGGAGTTCGGCGCCCGCCCGCTGCGCCGCACGATCCAGACGGAACTGGACAACCGCGTCGCCTCCCTGCTGCTC
GGCGGCGAAGCCGACCCCGGGGACACGATCGTCGCCGACGTGGTCGACGACTCCCTGCACTGCACCATCCGCAAGGGCGA
CGGCGACGGGGAGACCCCCGCCGCCGACACCCCCGACGGCGAGGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
51 |
95.012 |
0.485 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.78 |
94.418 |
0.423 |
| clpC | Streptococcus mutans UA159 |
42.354 |
97.862 |
0.414 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
53.643 |
76.603 |
0.411 |
| clpC | Streptococcus thermophilus LMD-9 |
44.695 |
89.549 |
0.4 |
| clpE | Streptococcus pneumoniae Rx1 |
53.6 |
74.228 |
0.398 |
| clpE | Streptococcus pneumoniae D39 |
53.6 |
74.228 |
0.398 |
| clpE | Streptococcus pneumoniae R6 |
53.6 |
74.228 |
0.398 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.526 |
74.109 |
0.397 |
| clpE | Streptococcus mutans UA159 |
53.56 |
73.397 |
0.393 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.941 |
89.192 |
0.392 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.175 |
84.917 |
0.384 |
| clpC | Streptococcus pneumoniae D39 |
45.035 |
84.917 |
0.382 |
| clpC | Streptococcus pneumoniae Rx1 |
45.035 |
84.917 |
0.382 |