Detailed information    

insolico Bioinformatically predicted

Overview


Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QCL67_RS23865 Genome accession   NZ_CP122442
Coordinates   4889456..4890889 (-) Length   477 a.a.
NCBI ID   WP_014171817.1    Uniprot ID   A0A839BTX8
Organism   Enterobacter ludwigii strain I9455333cz     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 4884456..4895889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL67_RS23835 (QCL67_23835) elbB 4885989..4886642 (+) 654 WP_121339883.1 isoprenoid biosynthesis glyoxalase ElbB -
  QCL67_RS23840 (QCL67_23840) mtgA 4886639..4887364 (+) 726 WP_182268743.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  QCL67_RS23845 (QCL67_23845) npr 4887403..4887675 (-) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  QCL67_RS23850 (QCL67_23850) rapZ 4887672..4888526 (-) 855 WP_014171820.1 RNase adapter RapZ -
  QCL67_RS23855 (QCL67_23855) ptsN 4888572..4889063 (-) 492 WP_014171819.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QCL67_RS23860 (QCL67_23860) hpf 4889146..4889433 (-) 288 WP_014171818.1 ribosome hibernation promoting factor -
  QCL67_RS23865 (QCL67_23865) rpoN/rpoN1 4889456..4890889 (-) 1434 WP_014171817.1 RNA polymerase factor sigma-54 Machinery gene
  QCL67_RS23870 (QCL67_23870) lptB 4890937..4891662 (-) 726 WP_014171816.1 LPS export ABC transporter ATP-binding protein -
  QCL67_RS23875 (QCL67_23875) lptA 4891669..4892223 (-) 555 WP_182268744.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  QCL67_RS23880 (QCL67_23880) lptC 4892192..4892767 (-) 576 WP_279795708.1 LPS export ABC transporter periplasmic protein LptC -
  QCL67_RS23885 (QCL67_23885) kdsC 4892764..4893330 (-) 567 WP_014171813.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QCL67_RS23890 (QCL67_23890) kdsD 4893345..4894331 (-) 987 WP_020883527.1 arabinose-5-phosphate isomerase KdsD -
  QCL67_RS23895 (QCL67_23895) - 4894345..4895322 (-) 978 WP_020883528.1 calcium/sodium antiporter -

Sequence


Protein


Download         Length: 477 a.a.        Molecular weight: 54206.00 Da        Isoelectric Point: 4.3224

>NTDB_id=815517 QCL67_RS23865 WP_014171817.1 4889456..4890889(-) (rpoN/rpoN1) [Enterobacter ludwigii strain I9455333cz]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQADLHEEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTILSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=815517 QCL67_RS23865 WP_014171817.1 4889456..4890889(-) (rpoN/rpoN1) [Enterobacter ludwigii strain I9455333cz]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCGATTCGCCTGTTGCA
ACTGTCCACCTTAGAACTCCAGCAGGAGCTCCAGCAAGCGCTGGATAGCAATCCGTTGCTGGAGCAAGCCGATCTTCATG
AAGAGGTAGATACCCAGCAGTCGCAGGATACTGAAGCACTCGACACCGCCGATGCGCTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGACGA
TGAGCTACCGGTTTATCAGGGTGAAACTACCCAGTCACTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACTGACCGCGCGATAGCGACATCCATTGTCGATGCCGTGGATGACACCGGTTATCTGACCGTCACGCTGGACGAA
ATTCTGGAAAGCATGGGTGACGAAGAGATTGAACTCGAGGAGATAGAAGCCGTTCTGAAGCGCATTCAGCGTTTCGATCC
GGTTGGGGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTTATCCAACTTTCTCAGTTCAGCAAAGAGACGCCATGGCTTG
ATGAAGCCCGCTTGATCATCAGCGACCATCTGGATCTTCTGGCCAATCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTCAATCTGATTCAGTCCCTCGATCCGCGCCCCGGTCAGTCCATTCAGACCAG
CGAACCCGAGTACGTCATCCCGGATGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTGAACTCAGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGATAATCAATACATTCGT
AGCAATTTGCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTCCGCGTAAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGTGAAGCGTCGTCAACGGCCATTCGCGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTGAGCGACAGTAAGTTAACCACCATACTGTCCGACCAGGGTATTATGGTGG
CACGCCGAACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A839BTX8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.941

100

0.486