Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QCL67_RS12915 Genome accession   NZ_CP122442
Coordinates   2608192..2608818 (-) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain I9455333cz     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2603192..2613818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL67_RS12900 (QCL67_12900) helD 2603430..2605484 (-) 2055 WP_150344201.1 DNA helicase IV -
  QCL67_RS12905 (QCL67_12905) - 2605607..2606053 (+) 447 WP_182268431.1 YccF domain-containing protein -
  QCL67_RS12910 (QCL67_12910) yccS 2606073..2608235 (+) 2163 WP_020884791.1 YccS family putative transporter -
  QCL67_RS12915 (QCL67_12915) sxy/tfoX 2608192..2608818 (-) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  QCL67_RS12920 (QCL67_12920) sulA 2609036..2609545 (+) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  QCL67_RS12925 (QCL67_12925) ompA 2609901..2610956 (+) 1056 WP_020884794.1 porin OmpA -
  QCL67_RS12930 (QCL67_12930) matP 2611026..2611478 (-) 453 WP_014169429.1 macrodomain Ter protein MatP -
  QCL67_RS12935 (QCL67_12935) - 2611665..2613425 (+) 1761 WP_047955309.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=815506 QCL67_RS12915 WP_020884792.1 2608192..2608818(-) (sxy/tfoX) [Enterobacter ludwigii strain I9455333cz]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=815506 QCL67_RS12915 WP_020884792.1 2608192..2608818(-) (sxy/tfoX) [Enterobacter ludwigii strain I9455333cz]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGTT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTGATGAAACGGGGTCGACCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAACTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTAAAGATGCGGGCGAAAAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCGCTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577