Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QC826_RS18280 Genome accession   NZ_CP122407
Coordinates   4010926..4012308 (-) Length   460 a.a.
NCBI ID   WP_279761861.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4005926..4017308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS18250 (QC826_18250) - 4006806..4007273 (+) 468 WP_279761858.1 SixA phosphatase family protein -
  QC826_RS18255 (QC826_18255) - 4007629..4008766 (-) 1138 Protein_3612 polyamine ABC transporter substrate-binding protein -
  QC826_RS18260 (QC826_18260) fliD 4008918..4009433 (-) 516 WP_279761859.1 flagellar filament capping protein FliD -
  QC826_RS18265 (QC826_18265) - 4009643..4009978 (+) 336 WP_279761860.1 hypothetical protein -
  QC826_RS18270 (QC826_18270) - 4010002..4010274 (-) 273 Protein_3615 flagellar cap protein FliD N-terminal domain-containing protein -
  QC826_RS18275 (QC826_18275) - 4010473..4010787 (-) 315 WP_245774277.1 PilZ domain-containing protein -
  QC826_RS18280 (QC826_18280) radA 4010926..4012308 (-) 1383 WP_279761861.1 DNA repair protein RadA Machinery gene
  QC826_RS18285 (QC826_18285) alr 4012314..4013402 (-) 1089 WP_279761862.1 alanine racemase -
  QC826_RS18290 (QC826_18290) - 4013501..4014223 (-) 723 WP_279761863.1 hypothetical protein -
  QC826_RS18295 (QC826_18295) - 4014252..4015178 (-) 927 WP_279761864.1 hypothetical protein -
  QC826_RS18300 (QC826_18300) - 4015822..4016025 (-) 204 WP_279761865.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48950.45 Da        Isoelectric Point: 7.1746

>NTDB_id=815476 QC826_RS18280 WP_279761861.1 4010926..4012308(-) (radA) [Rugamonas sp. DEMB1]
MATKAKTNYTCSDCGAVSNKWTGQCAACQQWNTMLETVLESGGQNRYSNPPQHMALAQTAPVLSLADIDAVDVPRFGTGI
EEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSHDKSVLYVSGEESGAQIALRAKRLLIDAKDLKLQAEIQLEK
ILGTLAELKPQVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRVAKQTGITIILVGHVTKEGALAGPRVLEHIVDTVL
YFEGDSHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVPGSCVMVTQEGTRPLLVEIQALVDTS
HLPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRSKALPSGFVVFGEVG
LAGEIRPAPRGQERLREAAKLGFKLAMIPKANAPKQPIEGMTIIAVERIDDAFNKLREYQ

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=815476 QC826_RS18280 WP_279761861.1 4010926..4012308(-) (radA) [Rugamonas sp. DEMB1]
GTGGCCACCAAAGCGAAAACCAACTACACCTGCAGCGACTGCGGCGCCGTCAGCAACAAGTGGACCGGCCAGTGCGCCGC
CTGCCAGCAGTGGAACACCATGCTCGAGACGGTGCTCGAGAGCGGCGGGCAGAACCGCTATTCGAACCCGCCGCAGCACA
TGGCGCTGGCGCAGACCGCGCCGGTGCTGTCGCTGGCCGACATCGACGCGGTCGACGTGCCGCGCTTCGGCACCGGCATC
GAGGAGTTCGACCGCGTGCTCGGCGGCGGCCTGGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAA
GTCGACCCTGCTGCTGCAGGCGCTGGCCAACCTCTCGCACGACAAGAGCGTGCTCTACGTCAGCGGCGAGGAGTCCGGCG
CGCAGATCGCGCTGCGCGCCAAGCGCCTGCTGATCGACGCCAAGGACTTGAAGCTGCAGGCCGAGATCCAGCTCGAGAAG
ATCCTCGGCACCCTGGCCGAGCTGAAGCCGCAGGTGGCGGTGATCGACTCGATCCAGACCGTGTATTCGGACGCGTTGAG
CTCGGCGCCCGGCTCGGTGGCCCAGGTGCGCGAGTGCGCCGCCCAGCTGACCCGGGTGGCCAAGCAGACCGGCATCACCA
TCATCCTGGTCGGCCACGTCACCAAGGAGGGCGCGCTGGCCGGCCCGCGCGTGCTCGAACACATCGTCGACACGGTGCTG
TACTTCGAGGGCGACAGCCATTCCAGTTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGG
TGTGTTCGCCATGACCGAGAAGGGCTTGAAGGGGGTGTCCAACCCGTCGGCGCTGTTCCTCTCGCAGCACGACAGCCAGG
TGCCGGGCTCCTGCGTGATGGTGACGCAGGAGGGCACCCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACACCAGC
CACCTGCCCAACGCGCGCCGCCTGTCGGTCGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCA
CGCCGGCATCGCCGCCTTCGACCAGGACGTTTTCATCAACGCCGTCGGCGGCGTCAAGATCACCGAGCCGGCGGCCGACC
TCGCCGTGCTGCTGGCGATCAACTCGTCGATGCGCAGCAAGGCCCTGCCGAGCGGCTTCGTGGTGTTCGGCGAGGTCGGC
CTGGCCGGCGAGATCCGCCCGGCGCCGCGCGGCCAGGAGCGCCTGCGCGAGGCCGCCAAGCTGGGCTTCAAGCTGGCCAT
GATCCCCAAGGCCAACGCGCCCAAGCAGCCGATCGAGGGCATGACCATCATCGCCGTCGAGCGCATCGACGACGCCTTCA
ACAAGCTGCGCGAATACCAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(70-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.148

99.783

0.48
  radA Streptococcus pneumoniae Rx1

46.304

100

0.463
  radA Streptococcus pneumoniae D39

46.304

100

0.463
  radA Streptococcus pneumoniae R6

46.304

100

0.463
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.463
  radA Streptococcus mitis SK321

46.491

99.13

0.461
  radA Streptococcus mitis NCTC 12261

46.374

98.913

0.459