Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   QC826_RS06565 Genome accession   NZ_CP122407
Coordinates   1417493..1417636 (+) Length   47 a.a.
NCBI ID   WP_279766406.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412493..1422636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS06555 (QC826_06555) asd 1413463..1414590 (+) 1128 WP_279764899.1 aspartate-semialdehyde dehydrogenase -
  QC826_RS06560 (QC826_06560) - 1414917..1416611 (+) 1695 WP_279764900.1 FimV family protein -
  QC826_RS06565 (QC826_06565) fimV 1417493..1417636 (+) 144 WP_279766406.1 FimV/HubP family polar landmark protein Machinery gene
  QC826_RS06570 (QC826_06570) truA 1417686..1418489 (+) 804 WP_279764901.1 tRNA pseudouridine(38-40) synthase TruA -
  QC826_RS06575 (QC826_06575) - 1418521..1419216 (+) 696 WP_279764902.1 phosphoribosylanthranilate isomerase -
  QC826_RS06580 (QC826_06580) trpB 1419200..1420450 (+) 1251 WP_279764903.1 tryptophan synthase subunit beta -
  QC826_RS06585 (QC826_06585) trpA 1420622..1421418 (+) 797 Protein_1305 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5061.71 Da        Isoelectric Point: 4.1954

>NTDB_id=815471 QC826_RS06565 WP_279766406.1 1417493..1417636(+) (fimV) [Rugamonas sp. DEMB1]
MDTKLDLAIAYQEIGDKEGARELLDEVLRGGSDDQVAKANAMRALLG

Nucleotide


Download         Length: 144 bp        

>NTDB_id=815471 QC826_RS06565 WP_279766406.1 1417493..1417636(+) (fimV) [Rugamonas sp. DEMB1]
ATGGACACCAAGCTCGACCTGGCCATCGCCTACCAGGAGATCGGCGACAAGGAGGGCGCCCGCGAGCTGCTCGACGAGGT
GTTGCGCGGCGGCAGCGACGACCAGGTGGCCAAGGCCAACGCCATGCGCGCCCTGCTGGGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

64.865

78.723

0.511