Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   QC826_RS02825 Genome accession   NZ_CP122407
Coordinates   609421..609834 (+) Length   137 a.a.
NCBI ID   WP_279764311.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 604421..614834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS02800 (QC826_02800) - 605235..605687 (-) 453 WP_279764307.1 glycoside hydrolase family 19 protein -
  QC826_RS02805 (QC826_02805) - 605958..606455 (-) 498 WP_279764308.1 hypothetical protein -
  QC826_RS02810 (QC826_02810) hemL 606743..608035 (-) 1293 WP_279764309.1 glutamate-1-semialdehyde 2,1-aminomutase -
  QC826_RS02815 (QC826_02815) - 608228..609091 (-) 864 WP_279764310.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QC826_RS02820 (QC826_02820) - 609188..609340 (+) 153 WP_093382643.1 rubredoxin -
  QC826_RS02825 (QC826_02825) pilG 609421..609834 (+) 414 WP_279764311.1 PleD family two-component system response regulator Regulator
  QC826_RS02830 (QC826_02830) - 609853..610260 (+) 408 WP_279764312.1 response regulator transcription factor -
  QC826_RS02835 (QC826_02835) - 610264..610830 (+) 567 WP_279764313.1 chemotaxis protein CheW -
  QC826_RS02840 (QC826_02840) - 610863..613190 (+) 2328 WP_409567752.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14715.99 Da        Isoelectric Point: 7.9293

>NTDB_id=815470 QC826_RS02825 WP_279764311.1 609421..609834(+) (pilG) [Rugamonas sp. DEMB1]
MTTTPQSTGLTIMVIDDSSTIRRSAEIFLSQAGYRVVLAEDGFDALAKINDHHPALVFCDILMPRLDGYQTCALIKKSAR
FHATPVLMLSSKDGLFDRARGAMVGSAAYLTKPFSKDSLLAAVREHTAGAAVPPPHA

Nucleotide


Download         Length: 414 bp        

>NTDB_id=815470 QC826_RS02825 WP_279764311.1 609421..609834(+) (pilG) [Rugamonas sp. DEMB1]
ATGACGACGACGCCGCAATCGACAGGTTTGACCATCATGGTGATCGACGACAGCAGCACGATCCGTCGCTCCGCCGAGAT
CTTCCTGAGCCAGGCCGGCTACCGGGTGGTGCTGGCCGAGGACGGCTTCGACGCGCTCGCCAAGATCAACGACCACCACC
CGGCGCTGGTGTTCTGCGACATTTTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCGCTGATCAAGAAGAGCGCGCGC
TTCCACGCCACGCCGGTGTTGATGTTGTCGTCCAAGGACGGCCTGTTCGACCGCGCCCGTGGCGCCATGGTCGGCTCGGC
CGCCTACCTGACCAAGCCCTTCAGCAAGGACAGCCTGCTGGCGGCGGTGCGCGAGCACACCGCCGGCGCGGCCGTCCCGC
CCCCCCATGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.5

87.591

0.547