Detailed information NTG0081545

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M2042_RS13730
• Genome accession: NZ_AP023187
• Coordinates: 2862445..2863431 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain HLBS-07
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2857445..2868431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2042_RS13715 (HLBS07_26400)	recA	2857991..2859034 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
M2042_RS13720 (HLBS07_26410)	pncC	2859235..2859717 (-)	483	WP_213891985.1	nicotinamide-nucleotide amidase	-
M2042_RS13725 (HLBS07_26420)	mutS	2859802..2862363 (+)	2562	WP_213891984.1	DNA mismatch repair protein MutS	-
M2042_RS13730 (HLBS07_26430)	rpoS	2862445..2863431 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
M2042_RS13735 (HLBS07_26440)	-	2863512..2864435 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
M2042_RS13740 (HLBS07_26450)	-	2864449..2865075 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
M2042_RS13745 (HLBS07_26460)	surE	2865075..2865851 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
M2042_RS13750 (HLBS07_26470)	truD	2865851..2866894 (-)	1044	WP_104979689.1	tRNA pseudouridine(13) synthase TruD	-
M2042_RS13755 (HLBS07_26480)	ispF	2866940..2867416 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
M2042_RS13760 (HLBS07_26490)	ispD	2867431..2868138 (-)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
M2042_RS13765 (HLBS07_26500)	ftsB	2868140..2868421 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=81545 M2042_RS13730 WP_005380887.1 2862445..2863431(-) (rpoS) [Vibrio alginolyticus strain HLBS-07]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=81545 M2042_RS13730 WP_005380887.1 2862445..2863431(-) (rpoS) [Vibrio alginolyticus strain HLBS-07]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTTCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854