Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R0492_RS20425 Genome accession   NZ_CP136649
Coordinates   3911673..3912311 (+) Length   212 a.a.
NCBI ID   WP_003186252.1    Uniprot ID   Q65DI5
Organism   Bacillus licheniformis strain NXU98     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3906673..3917311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS20395 - 3907362..3907742 (+) 381 WP_003186240.1 VOC family protein -
  R0492_RS20400 - 3907773..3908720 (-) 948 WP_003186242.1 phosphoglycerate dehydrogenase -
  R0492_RS20405 - 3908859..3909722 (-) 864 WP_003186243.1 glycosyltransferase family 8 protein -
  R0492_RS20410 - 3909843..3910019 (-) 177 WP_085959885.1 hypothetical protein -
  R0492_RS20415 - 3910016..3910186 (-) 171 WP_003186246.1 hypothetical protein -
  R0492_RS20420 - 3910457..3911680 (+) 1224 WP_011198417.1 sensor histidine kinase -
  R0492_RS20425 vraR 3911673..3912311 (+) 639 WP_003186252.1 response regulator transcription factor Regulator
  R0492_RS20430 - 3912428..3914602 (+) 2175 WP_003186255.1 MMPL family transporter -
  R0492_RS20435 - 3914699..3915439 (-) 741 WP_003186257.1 TIGR02206 family membrane protein -
  R0492_RS20440 - 3915534..3916865 (-) 1332 WP_003186259.1 MFS transporter -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23718.78 Da        Isoelectric Point: 6.0356

>NTDB_id=815440 R0492_RS20425 WP_003186252.1 3911673..3912311(+) (vraR) [Bacillus licheniformis strain NXU98]
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEMSGLEAIKLIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD

Nucleotide


Download         Length: 639 bp        

>NTDB_id=815440 R0492_RS20425 WP_003186252.1 3911673..3912311(+) (vraR) [Bacillus licheniformis strain NXU98]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCACTA
CATCATCATAGGAGAGGCGGAAAATGGCAAAGCAGCAGTTCGCCTTGCAGATGAATTAAAACCGGATATTATTCTCATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAAGCCATTAAACTAATAAAAGAAAAACACGACATCCCCATCATTATTTTG
ACTACGTATAATGAAGATCACTTAATGATCGAAGGAATTGAATTAGGGGCGAAAGGATATCTATTGAAGGATACAAGTTC
AGAAACCCTTTTTCATACGATGGACGCAGCAATAAGAGGAAACGTGCTATTGCAGCCTGATATCTTAAAACGTCTGCAAG
AAATCCAATTGGAGCGGATGAAGAAGCAGAGCAGTGATACGCAGCTGACAGAAAAGGAAGTCATAGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGAGAACAGTAAAGTCTAGACTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAAGCAGTGACGATTGCCATGCAAAGAGGCGTTCTGACATTAGACTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65DI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.528

0.363