Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QCD67_RS17970 Genome accession   NZ_CP122401
Coordinates   3707105..3708538 (-) Length   477 a.a.
NCBI ID   WP_279794215.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain EOBSR_19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3702105..3713538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCD67_RS17940 (QCD67_17940) elbB 3703635..3704288 (+) 654 WP_032653621.1 isoprenoid biosynthesis glyoxalase ElbB -
  QCD67_RS17945 (QCD67_17945) mtgA 3704285..3705010 (+) 726 WP_206804919.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  QCD67_RS17950 (QCD67_17950) npr 3705052..3705324 (-) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  QCD67_RS17955 (QCD67_17955) rapZ 3705321..3706175 (-) 855 WP_008501442.1 RNase adapter RapZ -
  QCD67_RS17960 (QCD67_17960) ptsN 3706221..3706712 (-) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QCD67_RS17965 (QCD67_17965) hpf 3706795..3707082 (-) 288 WP_008501444.1 ribosome hibernation promoting factor -
  QCD67_RS17970 (QCD67_17970) rpoN/rpoN1 3707105..3708538 (-) 1434 WP_279794215.1 RNA polymerase factor sigma-54 Machinery gene
  QCD67_RS17975 (QCD67_17975) lptB 3708586..3709311 (-) 726 WP_008501446.1 LPS export ABC transporter ATP-binding protein -
  QCD67_RS17980 (QCD67_17980) lptA 3709318..3709872 (-) 555 WP_008501447.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  QCD67_RS17985 (QCD67_17985) lptC 3709841..3710416 (-) 576 WP_021242266.1 LPS export ABC transporter periplasmic protein LptC -
  QCD67_RS17990 (QCD67_17990) kdsC 3710413..3710979 (-) 567 WP_047746897.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QCD67_RS17995 (QCD67_17995) kdsD 3710994..3711980 (-) 987 WP_047746896.1 arabinose-5-phosphate isomerase KdsD -
  QCD67_RS18000 (QCD67_18000) - 3711994..3712971 (-) 978 WP_008501451.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54121.94 Da        Isoelectric Point: 4.3358

>NTDB_id=815426 QCD67_RS17970 WP_279794215.1 3707105..3708538(-) (rpoN/rpoN1) [Enterobacter roggenkampii strain EOBSR_19]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDIEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDDEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLEEARAIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNSDSIPRLQINQQYASMCTSVRNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=815426 QCD67_RS17970 WP_279794215.1 3707105..3708538(-) (rpoN/rpoN1) [Enterobacter roggenkampii strain EOBSR_19]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGTAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACCCAGCAATCGCAGGATATTGAAGCGCTCGATACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTTCCGCTTGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGACGA
TGAGCTACCGGTCTATCAGGGCGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTCACCCCCTTCT
CCGATACCGATCGCGCGATTGCCACGTCCATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACCCTCGACGAT
ATACTGGAAAGCATGGGCGACGACGAGATTGAGCTTGAGGAAGTCGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTAGCCGCAAAAGATCTGCGCGACTGCCTGCTGATTCAGCTTTCTCAGTTCAGTAAAGAGACGCCATGGCTCG
AGGAGGCGCGCGCGATCATCAGCGATCATCTGGATCTGCTGGCGAACCACGATTTCCGCACCCTGATGCGAGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGCCCCGGTCAGTCGATCCAGACCAG
CGAGCCCGAGTACGTGATCCCGGATGTGCTGGTCAGAAAACACAACGGCCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACGCCGACAACCAATATATTCGT
AGCAATTTGCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCTTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCTCTGGTGAAGAAGTT
GATCGCCGCGGAGAATCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48