Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   P8596_RS15170 Genome accession   NZ_CP122397
Coordinates   2906983..2908692 (-) Length   569 a.a.
NCBI ID   WP_159362219.1    Uniprot ID   -
Organism   Rossellomorea sp. DA94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2901983..2913692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8596_RS15145 (P8596_15145) - 2902907..2903146 (+) 240 WP_034758056.1 DUF2627 domain-containing protein -
  P8596_RS15150 (P8596_15150) - 2903160..2903894 (-) 735 WP_279724247.1 glycerophosphodiester phosphodiesterase -
  P8596_RS15155 (P8596_15155) - 2904039..2904251 (-) 213 WP_279724248.1 hypothetical protein -
  P8596_RS15160 (P8596_15160) spo0A 2904484..2905263 (-) 780 WP_034758050.1 sporulation transcription factor Spo0A -
  P8596_RS15165 (P8596_15165) spoIVB 2905567..2906856 (-) 1290 WP_034758047.1 SpoIVB peptidase -
  P8596_RS15170 (P8596_15170) recN 2906983..2908692 (-) 1710 WP_159362219.1 DNA repair protein RecN Machinery gene
  P8596_RS15175 (P8596_15175) argR 2908803..2909252 (-) 450 WP_034760580.1 transcriptional regulator ArgR -
  P8596_RS15180 (P8596_15180) - 2909832..2910668 (-) 837 WP_229592244.1 TlyA family RNA methyltransferase -
  P8596_RS15185 (P8596_15185) dxs 2910671..2912563 (-) 1893 WP_224519544.1 1-deoxy-D-xylulose-5-phosphate synthase -
  P8596_RS15190 (P8596_15190) - 2912585..2913217 (-) 633 WP_279724249.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64040.95 Da        Isoelectric Point: 5.1971

>NTDB_id=815351 P8596_RS15170 WP_159362219.1 2906983..2908692(-) (recN) [Rossellomorea sp. DA94]
MLQELSIKNFAIIDSLSLSFEEGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEYVRHGEKKAEIEGLFILDNETHPCFQK
AADFGIEIEEGMIVLRRDISSTGKSVCRINGKLVTIAIMREVGASLIDIHGQHEHQELMNESLHLSLLDQFGGKDIASGL
SSYGQVYKEYLSIYKQLNRLNDNEQEMAHRLDLIQFQLKEIQDANLQLNEDEELQEEKRKLMNFEKLFEALQTSYDSIQG
ERKGMDWAGLAMSHLETAAEVDSQYAKTLESVSNAYYILEDAAHQVRGGLDMLEFEPNRLDLIEARLNEINGLKRKYGSS
VEEILAYSSKIEEEIETIMNKDSHVEQLQSKLHSLEKDLSLEAKNLSDTRKMWAKKLTASIHEQLKQLYMDKTKFEVRFV
KSGENESFSFHDFKKDGWDTVEFYISTNPGEPLKPLSKVASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQ
AIAEKIYQVAVHSQVMCISHLPQVAAMADCHLFISKKMSGGRTSTMVKRLQEKDKIREISRMISGVEITDLTLEHAKELL
QLAGSIKET

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=815351 P8596_RS15170 WP_159362219.1 2906983..2908692(-) (recN) [Rossellomorea sp. DA94]
TTGCTACAAGAACTATCAATCAAAAATTTCGCCATTATCGATTCCCTTTCCCTTTCGTTTGAAGAAGGATTGACTGTATT
ATCAGGTGAAACGGGTGCGGGTAAGTCGATCATCATCGATGCCATTCATTTACTGGTTGGCGGCAGAGGCTCCTCTGAGT
ATGTACGGCATGGGGAGAAGAAGGCGGAAATTGAAGGGTTATTTATTCTTGATAATGAAACACATCCCTGCTTTCAGAAA
GCGGCAGACTTCGGGATCGAGATCGAGGAAGGTATGATCGTCCTCAGAAGGGATATCTCGAGCACGGGGAAAAGTGTTTG
CAGAATTAATGGGAAGCTGGTGACGATCGCCATCATGAGGGAAGTCGGGGCATCCCTTATTGACATCCACGGGCAGCACG
AACATCAGGAACTCATGAATGAAAGCCTTCATCTTTCCTTATTGGACCAATTCGGAGGGAAGGATATTGCATCCGGTTTA
TCCAGTTATGGACAAGTATACAAAGAATATCTATCCATCTATAAGCAGCTGAACAGATTGAATGATAATGAACAGGAGAT
GGCTCATCGCTTGGACCTGATTCAATTTCAGCTGAAAGAGATCCAAGATGCGAATCTTCAGCTTAATGAAGATGAAGAGT
TGCAGGAAGAGAAGCGGAAACTGATGAACTTTGAAAAGCTATTCGAAGCGCTTCAAACCTCGTATGACAGCATACAAGGG
GAAAGAAAGGGGATGGACTGGGCAGGACTCGCCATGAGCCATCTTGAAACCGCTGCAGAAGTCGATTCTCAGTATGCAAA
GACGCTTGAATCCGTATCGAATGCGTATTATATCCTTGAAGATGCCGCCCATCAAGTCAGGGGTGGATTGGATATGCTTG
AATTCGAGCCGAATCGACTGGACCTGATTGAGGCAAGATTGAATGAAATCAATGGTCTTAAGAGAAAATATGGATCATCG
GTAGAAGAGATTCTTGCCTATAGTTCTAAGATCGAAGAAGAAATCGAAACGATCATGAATAAGGATTCCCATGTTGAACA
ATTACAAAGTAAATTACATTCACTTGAAAAAGATCTATCCCTGGAGGCGAAAAACCTATCCGATACTAGAAAAATGTGGG
CGAAGAAATTGACCGCCAGTATCCACGAACAGTTAAAGCAGCTGTATATGGATAAGACGAAATTCGAAGTCAGGTTTGTG
AAAAGCGGGGAAAACGAATCCTTTTCGTTTCATGATTTTAAGAAGGATGGTTGGGATACGGTTGAGTTTTATATTTCCAC
CAATCCAGGAGAGCCGTTGAAGCCGTTATCGAAGGTGGCTTCAGGTGGGGAACTGTCACGGATCATGCTTGCCCTTAAAA
CCATTTTTTCAAAGCATCAAGGGATTACATCGATCATTTTTGATGAGGTTGATACAGGTGTGAGCGGCAGGGTCGCCCAG
GCCATTGCTGAAAAGATTTACCAGGTTGCCGTCCATTCACAAGTGATGTGCATCTCTCACTTGCCTCAGGTGGCAGCCAT
GGCCGATTGTCACTTGTTCATTTCGAAAAAAATGTCAGGAGGCAGGACGAGCACCATGGTGAAGCGTCTTCAGGAAAAAG
ATAAGATCAGGGAAATTTCACGTATGATTTCAGGAGTGGAAATAACCGATCTGACGCTTGAGCATGCAAAGGAATTACTG
CAACTGGCCGGTTCCATTAAAGAGACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.549

100

0.603