Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   M2042_RS07640 Genome accession   NZ_AP023187
Coordinates   1686974..1688500 (-) Length   508 a.a.
NCBI ID   WP_085569876.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HLBS-07     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681974..1693500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2042_RS07620 - 1681992..1683423 (-) 1432 Protein_1471 lipopolysaccharide biosynthesis protein -
  M2042_RS07625 (HLBS07_15220) - 1683416..1684588 (-) 1173 WP_104979163.1 glycosyltransferase -
  M2042_RS07630 (HLBS07_15230) - 1684600..1685784 (-) 1185 WP_248525187.1 glycosyltransferase -
  M2042_RS07635 (HLBS07_15240) - 1685929..1686999 (-) 1071 WP_213891671.1 glycosyltransferase family 4 protein -
  M2042_RS07640 (HLBS07_15250) luxO 1686974..1688500 (-) 1527 WP_085569876.1 sigma-54 dependent transcriptional regulator Regulator
  M2042_RS07645 (HLBS07_15260) - 1688809..1689189 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  M2042_RS07650 (HLBS07_15270) - 1689201..1689887 (-) 687 WP_054730238.1 AAA family ATPase -
  M2042_RS07655 (HLBS07_15280) - 1689887..1691989 (-) 2103 WP_064353904.1 SLBB domain-containing protein -
  M2042_RS07660 (HLBS07_15290) - 1691986..1692852 (-) 867 WP_225491402.1 OmpA family protein -
  M2042_RS07665 (HLBS07_15300) - 1692879..1693199 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56584.50 Da        Isoelectric Point: 5.9083

>NTDB_id=81535 M2042_RS07640 WP_085569876.1 1686974..1688500(-) (luxO) [Vibrio alginolyticus strain HLBS-07]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESANIAPITPPPVYTEEPSPSAVEPSITAAELPGTPSSAATSPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=81535 M2042_RS07640 WP_085569876.1 1686974..1688500(-) (luxO) [Vibrio alginolyticus strain HLBS-07]
ATGAGACCAAGGGTATTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTGAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGCCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCTGTCCACCGCCAGAG
TGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGTGAAGCTCA
ACATATCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTCACTAAAAAGTCAAAAGTTACGAAAACAACGACACCTGCG
CATGTTGCTCAAGAGTCAGCAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCGTCGATTACCGCAGCGGAGCTGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACTCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484

Multiple sequence alignment