Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P8596_RS08470 Genome accession   NZ_CP122397
Coordinates   1614820..1616643 (+) Length   607 a.a.
NCBI ID   WP_279726591.1    Uniprot ID   -
Organism   Rossellomorea sp. DA94     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609820..1621643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8596_RS08450 (P8596_08450) spxA 1610447..1610842 (+) 396 WP_032089161.1 transcriptional regulator SpxA -
  P8596_RS08455 (P8596_08455) mecA 1611177..1611848 (+) 672 WP_034763461.1 adaptor protein MecA -
  P8596_RS08460 (P8596_08460) cls 1611954..1613459 (+) 1506 WP_224520449.1 cardiolipin synthase -
  P8596_RS08465 (P8596_08465) - 1613550..1614731 (+) 1182 WP_279726590.1 competence protein CoiA family protein -
  P8596_RS08470 (P8596_08470) pepF 1614820..1616643 (+) 1824 WP_279726591.1 oligoendopeptidase F Regulator
  P8596_RS08475 (P8596_08475) - 1616736..1616924 (-) 189 WP_061810837.1 hypothetical protein -
  P8596_RS08480 (P8596_08480) - 1617205..1618071 (-) 867 WP_051758461.1 ClpXP adapter SpxH family protein -
  P8596_RS08485 (P8596_08485) - 1618064..1618465 (-) 402 WP_034763471.1 globin -
  P8596_RS08490 (P8596_08490) - 1618714..1619355 (-) 642 WP_224520446.1 lytic transglycosylase domain-containing protein -
  P8596_RS08495 (P8596_08495) - 1619403..1619990 (-) 588 WP_254653601.1 CYTH domain-containing protein -
  P8596_RS08500 (P8596_08500) - 1620119..1620493 (+) 375 WP_224520444.1 hypothetical protein -
  P8596_RS08505 (P8596_08505) - 1620513..1621175 (+) 663 WP_224520443.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70214.57 Da        Isoelectric Point: 4.6892

>NTDB_id=815342 P8596_RS08470 WP_279726591.1 1614820..1616643(+) (pepF) [Rossellomorea sp. DA94]
MSKDTATKSLPGRKEVDVTLTWRLEDIFESDDAWEKEYKEIQGMTKRADEFKGTLGDSADQLYKAFAFQDEIMERMGKVY
TYSHMRYDQDTTNSYYQGLDDRAKSLYTQLGSKFAYLVPEVLSIDEEKLKGFLEEKDELKKYKHALEEINLQRPHVLSAE
EEALLAQASEVFSAASNTFGMLNNADLEFPSIKDENGEEVDITHGRFIRFLESSDRRVREEAFKKVYETYGKFENTFAST
LSGAVKKDNFVANVRHYDSARHAALSNNNIPEEVYDNLVDTVNKNLHLLQRYVKLRKKVLGLDEVHMYDLYTPLVKEVKM
DISYDEAQSMILDGLKPLGEEYANVLKEGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRSSQPYTYGHYSIFVAEVASTCNEALLNDYLLNTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHKKAQ
EGEALTSEFLTKQYYELNKKYFGEDISIDEEIGLEWVRIPHFYYNYYVYQYATGFSAATALSQQILEEGEPAVERYIDFL
KAGSSDYPIEVLKKAGVDVTTSKPVEDACKVFEEKLNEMEELLEKLQ

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=815342 P8596_RS08470 WP_279726591.1 1614820..1616643(+) (pepF) [Rossellomorea sp. DA94]
ATGTCAAAAGATACAGCTACTAAAAGTCTGCCTGGAAGAAAAGAGGTAGATGTAACGTTAACGTGGAGATTGGAAGATAT
TTTCGAAAGTGATGATGCGTGGGAGAAAGAATATAAAGAAATCCAAGGAATGACAAAGAGAGCAGACGAATTTAAGGGAA
CACTGGGTGATAGTGCAGATCAGCTTTATAAAGCATTTGCCTTCCAGGATGAAATAATGGAACGTATGGGTAAGGTGTAT
ACATATTCTCATATGCGCTATGACCAGGATACGACCAATTCCTATTATCAGGGTCTTGATGACCGTGCCAAAAGTCTTTA
TACACAGTTAGGGAGTAAGTTTGCTTATTTGGTACCGGAAGTTCTATCGATTGACGAAGAGAAGCTGAAAGGTTTCCTTG
AAGAGAAGGATGAACTGAAAAAGTATAAGCATGCTTTAGAGGAAATCAATCTTCAGCGTCCGCATGTTCTCTCCGCTGAA
GAAGAAGCACTTTTGGCCCAGGCGTCTGAAGTGTTCAGTGCTGCAAGCAATACATTCGGCATGTTGAATAACGCAGACCT
TGAGTTTCCGAGCATCAAAGATGAAAATGGGGAAGAAGTGGATATCACACACGGTCGTTTTATCCGATTCTTGGAGAGCA
GCGATCGCCGTGTCCGGGAAGAAGCCTTTAAAAAGGTCTATGAAACGTACGGGAAATTTGAAAACACATTCGCCTCAACG
TTAAGCGGAGCGGTGAAGAAAGATAATTTCGTCGCAAACGTCAGGCATTACGATTCGGCGAGACATGCGGCATTATCCAA
TAACAATATTCCTGAAGAAGTGTATGATAACCTTGTCGATACGGTGAATAAAAACCTTCATCTCCTTCAGCGTTATGTCA
AGCTTCGTAAGAAAGTGCTGGGTCTGGATGAGGTTCATATGTATGATTTGTATACCCCACTCGTGAAGGAAGTCAAAATG
GACATAAGCTATGACGAAGCACAGAGCATGATCCTCGACGGACTAAAGCCACTGGGTGAGGAGTATGCCAATGTACTGAA
AGAAGGATTTGAGAATCGCTGGGTGGACGTGGTCGAAAATAAAGGAAAGAGAAGTGGTGCCTACTCATCCGGGGCATACG
GTACCAATCCTTATATCCTCATGAATTGGCAGGATAATGTAAACAATCTGTTCACACTGGCCCATGAATTCGGTCACAGT
GTCCATAGTTACTATACGCGCAGTTCCCAACCTTATACGTACGGTCATTATTCCATCTTTGTGGCAGAAGTCGCTTCCAC
TTGCAATGAAGCATTATTAAATGATTATCTGTTAAATACGATCGATGATGAGAAGAAAAGATTGTACCTGTTGAATCATT
ATCTTGAAGGATTCAGAGGGACTGTTTTCCGTCAGACGATGTTTGCTGAATTCGAGCATCTTATCCATAAGAAAGCCCAG
GAAGGAGAAGCGCTGACTTCGGAGTTCCTCACCAAACAGTATTATGAGTTGAATAAGAAGTATTTCGGGGAAGACATTTC
GATTGATGAAGAGATTGGATTGGAATGGGTTCGTATCCCCCATTTCTATTACAATTATTATGTATATCAATATGCTACAG
GCTTCTCTGCAGCAACGGCCCTTAGTCAACAGATCCTGGAAGAAGGCGAGCCTGCAGTGGAACGCTACATCGATTTCCTT
AAAGCTGGAAGTTCCGATTACCCGATTGAAGTATTGAAGAAAGCAGGGGTGGATGTGACAACATCCAAACCGGTGGAAGA
TGCTTGTAAGGTCTTTGAAGAAAAGCTGAATGAAATGGAAGAACTGCTTGAAAAATTGCAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

97.694

0.493