Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M2042_RS06445 Genome accession   NZ_AP023187
Coordinates   1400198..1401619 (-) Length   473 a.a.
NCBI ID   WP_248525082.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HLBS-07     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395198..1406619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2042_RS06420 (HLBS07_12640) - 1395727..1396377 (+) 651 WP_248525080.1 thiopurine S-methyltransferase -
  M2042_RS06425 (HLBS07_12650) purT 1396450..1397625 (-) 1176 WP_021033842.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  M2042_RS06430 (HLBS07_12660) cdd 1397771..1398658 (-) 888 WP_138939958.1 cytidine deaminase -
  M2042_RS06435 (HLBS07_12670) - 1399089..1399766 (-) 678 WP_005385454.1 LrgB family protein -
  M2042_RS06440 (HLBS07_12680) - 1399768..1400142 (-) 375 WP_005385452.1 CidA/LrgA family protein -
  M2042_RS06445 (HLBS07_12690) sbcB 1400198..1401619 (-) 1422 WP_248525082.1 exodeoxyribonuclease I Machinery gene
  M2042_RS06450 (HLBS07_12700) - 1401777..1403150 (-) 1374 WP_025766775.1 L-cystine transporter -
  M2042_RS06455 (HLBS07_12710) - 1403351..1404040 (-) 690 WP_005385448.1 NAD(P)H-binding protein -
  M2042_RS06460 (HLBS07_12720) cobT 1404289..1405332 (+) 1044 WP_104979038.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  M2042_RS06465 (HLBS07_12730) - 1405332..1406138 (+) 807 WP_053306937.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54474.67 Da        Isoelectric Point: 4.8658

>NTDB_id=81534 M2042_RS06445 WP_248525082.1 1400198..1401619(-) (sbcB) [Vibrio alginolyticus strain HLBS-07]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIEPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=81534 M2042_RS06445 WP_248525082.1 1400198..1401619(-) (sbcB) [Vibrio alginolyticus strain HLBS-07]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGAACCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAACAATGTCTCGCCAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCCGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment