Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R0492_RS06035 Genome accession   NZ_CP136649
Coordinates   1170851..1171591 (+) Length   246 a.a.
NCBI ID   WP_009328947.1    Uniprot ID   Q65LS1
Organism   Bacillus licheniformis strain NXU98     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165851..1176591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS06000 - 1166004..1166351 (+) 348 WP_003180252.1 YhaI family protein -
  R0492_RS06005 - 1166348..1166968 (-) 621 WP_003180254.1 HTH-type transcriptional regulator Hpr -
  R0492_RS06010 - 1167162..1167518 (-) 357 WP_003180256.1 YtxH domain-containing protein -
  R0492_RS06015 - 1167680..1167871 (+) 192 WP_003180258.1 hypothetical protein -
  R0492_RS06020 - 1167962..1168489 (-) 528 WP_003180260.1 tryptophan transporter -
  R0492_RS06025 serC 1168632..1169705 (-) 1074 WP_161658293.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  R0492_RS06030 - 1169904..1170323 (-) 420 WP_009328949.1 HIT family protein -
  R0492_RS06035 pptA 1170851..1171591 (+) 741 WP_009328947.1 ABC transporter ATP-binding protein Regulator
  R0492_RS06040 - 1171584..1172807 (+) 1224 WP_011197713.1 ABC transporter permease -
  R0492_RS06045 - 1172860..1173570 (+) 711 WP_009328945.1 EcsC family protein -
  R0492_RS06050 - 1173591..1174763 (-) 1173 WP_164906533.1 M20 family metallopeptidase -
  R0492_RS06055 - 1174905..1176278 (-) 1374 WP_009328943.1 hypothetical protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 28113.56 Da        Isoelectric Point: 4.9850

>NTDB_id=815330 R0492_RS06035 WP_009328947.1 1170851..1171591(+) (pptA) [Bacillus licheniformis strain NXU98]
MSLLTVKELTGGYTRNPVLRDVSFAIEREQIVGLIGLNGAGKSTTIRHIIGLMEPHKGSVELNGKTFMDDPESYRSQFTF
IPETPILYEELTLKEHLELTAMAYGLSKETFEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLVEPDLYIIDE
PFLGLDPLAINALLERMNEAKKNGSAVLMSTHILATAERYCDSFIILHNGEVRAKGTLEELREQFSMEEASLDDLYLELT
KEESYE

Nucleotide


Download         Length: 741 bp        

>NTDB_id=815330 R0492_RS06035 WP_009328947.1 1170851..1171591(+) (pptA) [Bacillus licheniformis strain NXU98]
ATGTCACTACTGACTGTTAAAGAGTTAACTGGAGGGTATACAAGAAACCCGGTGCTGCGCGATGTTTCATTTGCGATTGA
ACGGGAGCAGATCGTCGGGCTGATCGGTTTGAACGGAGCGGGGAAAAGCACGACGATCCGGCATATCATCGGCTTAATGG
AACCGCACAAAGGATCTGTTGAATTGAACGGCAAAACGTTCATGGACGATCCGGAAAGCTACCGTTCCCAATTTACGTTT
ATTCCGGAAACGCCGATTTTATATGAAGAGCTGACATTGAAGGAGCATTTGGAGCTGACTGCGATGGCGTACGGGCTTTC
GAAGGAAACGTTCGAGAAAAGGCTGCCGCCGCTTTTGAAGGAATTCAGAATGGAGAAGCGTCTGAAATGGTTCCCGGCCC
ATTTTTCAAAAGGAATGAAGCAGAAGGTTATGATCATGTGCGCTTTCCTTGTCGAACCTGACCTGTACATTATAGACGAA
CCGTTTCTCGGTCTTGATCCGCTGGCGATCAATGCCCTTCTCGAGCGGATGAATGAAGCGAAGAAAAACGGCTCGGCCGT
TTTGATGTCGACGCATATTTTGGCAACGGCAGAGCGATATTGCGACTCCTTCATCATTCTCCATAACGGCGAAGTGCGGG
CGAAAGGAACGCTTGAAGAGCTCAGAGAACAGTTTTCGATGGAAGAAGCGAGCCTCGATGACCTGTATCTTGAACTGACG
AAGGAAGAGAGCTATGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65LS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.676

97.967

0.565
  pptA Streptococcus thermophilus LMD-9

56.432

97.967

0.553