Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R0492_RS04125 Genome accession   NZ_CP136649
Coordinates   826409..827125 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain NXU98     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 821409..832125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS04110 - 821612..823024 (+) 1413 WP_009329067.1 sodium:alanine symporter family protein -
  R0492_RS04115 treP 823213..824625 (+) 1413 WP_011197645.1 PTS system trehalose-specific EIIBC component -
  R0492_RS04120 treC 824699..826387 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  R0492_RS04125 treR 826409..827125 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  R0492_RS04130 - 827232..827924 (+) 693 WP_003179750.1 N-acetyltransferase -
  R0492_RS04135 - 828051..829385 (+) 1335 WP_003179752.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=815321 R0492_RS04125 WP_009329065.1 826409..827125(+) (treR) [Bacillus licheniformis strain NXU98]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=815321 R0492_RS04125 WP_009329065.1 826409..827125(+) (treR) [Bacillus licheniformis strain NXU98]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412