Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R0513_RS03150 Genome accession   NZ_CP136638
Coordinates   602993..603376 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain S2-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 597993..608376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS03130 (R0513_03130) - 598072..600006 (-) 1935 WP_002918407.1 RNB domain-containing ribonuclease -
  R0513_RS03135 (R0513_03135) ilvC 600125..601147 (+) 1023 WP_002873648.1 ketol-acid reductoisomerase -
  R0513_RS03140 (R0513_03140) - 601151..602233 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  R0513_RS03145 (R0513_03145) dprA 602223..602996 (+) 774 WP_002873646.1 DNA-processing protein DprA Machinery gene
  R0513_RS03150 (R0513_03150) dprB 602993..603376 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  R0513_RS03155 (R0513_03155) - 603405..604244 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R0513_RS03160 (R0513_03160) msrA 604420..604917 (-) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R0513_RS03165 (R0513_03165) ppa 604958..605476 (-) 519 WP_002852138.1 inorganic diphosphatase -
  R0513_RS03170 (R0513_03170) adk 605486..606064 (-) 579 WP_002868428.1 adenylate kinase -
  R0513_RS03175 (R0513_03175) aspS 606061..607812 (-) 1752 WP_041160066.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=815267 R0513_RS03150 WP_002852281.1 602993..603376(+) (dprB) [Campylobacter jejuni strain S2-20]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=815267 R0513_RS03150 WP_002852281.1 602993..603376(+) (dprB) [Campylobacter jejuni strain S2-20]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449