Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   M2042_RS01205 Genome accession   NZ_AP023187
Coordinates   264568..265596 (-) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HLBS-07     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 259568..270596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2042_RS01185 (HLBS07_02360) - 259735..260652 (-) 918 WP_046874064.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  M2042_RS01190 (HLBS07_02380) hslU 261769..263100 (-) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  M2042_RS01195 (HLBS07_02390) hslV 263124..263675 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  M2042_RS01200 (HLBS07_02400) ftsN 263791..264339 (-) 549 WP_017820300.1 cell division protein FtsN -
  M2042_RS01205 (HLBS07_02410) cytR 264568..265596 (-) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  M2042_RS01210 (HLBS07_02420) priA 265900..268104 (-) 2205 WP_054574240.1 primosomal protein N' -
  M2042_RS01215 (HLBS07_02430) rpmE 268401..268622 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  M2042_RS01220 (HLBS07_02440) rpsJ 269079..269390 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  M2042_RS01225 (HLBS07_02450) rplC 269405..270034 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=81524 M2042_RS01205 WP_254901949.1 264568..265596(-) (cytR) [Vibrio alginolyticus strain HLBS-07]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=81524 M2042_RS01205 WP_254901949.1 264568..265596(-) (cytR) [Vibrio alginolyticus strain HLBS-07]
ATAAATGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCCTTAATGAATCCAGAGAAGGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGCAACTTACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGCTCTTTCGTAAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTAC
CATTCGATGTCAGTAAGCCAGAGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTT
CCGACAGTACATATTGATAACCTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGC
TCAAATCTCTGGACCAGACACAGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAACCACCAACGGCTATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CCATCTCTCAACCTCGCTATGAGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGTCTGCTTGAAACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874

Multiple sequence alignment