Detailed information NTG0815188

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: A7P62_RS07545
• Genome accession: NZ_CP122320
• Coordinates: 1590132..1591514 (+)
• Length: 460 a.a.
• NCBI ID: WP_010253610.1
• Uniprot ID: -
• Organism: Pantoea agglomerans pv. gypsophilae strain 824-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1585132..1596514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7P62_RS07520 (A7P62_07520)	-	1586198..1586608 (+)	411	WP_064690538.1	DNA polymerase III subunit psi	-
A7P62_RS07525 (A7P62_07525)	rimI	1586580..1587020 (+)	441	WP_010671713.1	ribosomal protein S18-alanine N-acetyltransferase	-
A7P62_RS07530 (A7P62_07530)	yjjG	1587039..1587719 (+)	681	WP_010671712.1	pyrimidine 5'-nucleotidase	-
A7P62_RS07535 (A7P62_07535)	-	1588383..1589033 (-)	651	WP_010253606.1	YtjB family periplasmic protein	-
A7P62_RS07540 (A7P62_07540)	serB	1589141..1590118 (+)	978	WP_010253608.1	phosphoserine phosphatase	-
A7P62_RS07545 (A7P62_07545)	radA	1590132..1591514 (+)	1383	WP_010253610.1	DNA repair protein RadA	Machinery gene
A7P62_RS07550 (A7P62_07550)	nadR	1591590..1592831 (+)	1242	WP_010253612.1	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	-
A7P62_RS07555 (A7P62_07555)	-	1592877..1593878 (-)	1002	WP_064690537.1	zinc-binding alcohol dehydrogenase family protein	-
A7P62_RS07560 (A7P62_07560)	-	1594083..1594979 (+)	897	WP_010253616.1	LysR family transcriptional regulator	-
A7P62_RS07565 (A7P62_07565)	-	1594960..1595562 (-)	603	WP_033770937.1	putative adenosine monophosphate-protein transferase Fic	-
A7P62_RS07570 (A7P62_07570)	-	1595575..1595739 (-)	165	WP_109652447.1	YhfG family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 49321.96 Da
• Isoelectric Point: 7.4220

>NTDB_id=815188 A7P62_RS07545 WP_010253610.1 1590132..1591514(+) (radA) [Pantoea agglomerans pv. gypsophilae strain 824-1]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide

• Length: 1383 bp

>NTDB_id=815188 A7P62_RS07545 WP_010253610.1 1590132..1591514(+) (radA) [Pantoea agglomerans pv. gypsophilae strain 824-1]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAATACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCCGGCAGCGCCGGAACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCTACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCTACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATTGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTAATGCACATGGCGGAGAT
CCAGTCATCGCCCGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTTGGTCACGTCACCAAAGATGGTTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTTAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCAGTGGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCCGTTTTACACCG
TCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACTGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (347-433)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• AAA domain (AAA_25) (87-225)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.373	100	0.485
radA	Streptococcus mitis NCTC 12261	44.82	96.522	0.433
radA	Streptococcus pneumoniae Rx1	45.244	93.696	0.424
radA	Streptococcus pneumoniae D39	45.244	93.696	0.424
radA	Streptococcus pneumoniae R6	45.244	93.696	0.424
radA	Streptococcus pneumoniae TIGR4	45.244	93.696	0.424
radA	Streptococcus mitis SK321	45.244	93.696	0.424