Detailed information NTG0815082

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: RZV12_RS24615
• Genome accession: NZ_CP136552
• Coordinates: 4994406..4995389 (-)
• Length: 327 a.a.
• NCBI ID: WP_001196486.1
• Uniprot ID: A7ZT85
• Organism: Escherichia coli O104:H4 strain rpoS_ATGtoATA
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 4989406..5000389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RZV12_RS24585	-	4990073..4990180 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
RZV12_RS24590	-	4990556..4990663 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
RZV12_RS24595	-	4991039..4991146 (-)	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	-
RZV12_RS24600	-	4991522..4991628 (-)	107	Protein_4798	type I toxin-antitoxin system toxin Ldr family protein	-
RZV12_RS24605	yhjV	4992104..4993375 (+)	1272	WP_001307456.1	aromatic amino acid transport family protein	-
RZV12_RS24610	dppF	4993405..4994409 (-)	1005	WP_000107024.1	dipeptide ABC transporter ATP-binding subunit DppF	-
RZV12_RS24615	amiE	4994406..4995389 (-)	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	Regulator
RZV12_RS24620	dppC	4995400..4996302 (-)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
RZV12_RS24625	dppB	4996312..4997331 (-)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
RZV12_RS24630	dppA	4997482..4999089 (-)	1608	WP_001222883.1	dipeptide ABC transporter substrate-binding protein DppA	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35844.36 Da
• Isoelectric Point: 6.5814

>NTDB_id=815082 RZV12_RS24615 WP_001196486.1 4994406..4995389(-) (amiE) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=815082 RZV12_RS24615 WP_001196486.1 4994406..4995389(-) (amiE) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGTAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGATGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

3D structure

• AlphaFold DB: A7ZT85

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMG 18311	42.991	98.165	0.422
amiE	Streptococcus thermophilus LMD-9	42.991	98.165	0.422
oppD	Streptococcus mutans UA159	41.379	97.554	0.404