Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RZV12_RS08880 Genome accession   NZ_CP136552
Coordinates   1863250..1863879 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O104:H4 strain rpoS_ATGtoATA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1858250..1868879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV12_RS08860 ycbZ 1858651..1860411 (-) 1761 WP_000156526.1 Lon protease family protein -
  RZV12_RS08865 matP 1860597..1861049 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RZV12_RS08870 ompA 1861125..1862165 (-) 1041 WP_000750416.1 porin OmpA -
  RZV12_RS08875 sulA 1862522..1863031 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RZV12_RS08880 sxy/tfoX 1863250..1863879 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RZV12_RS08885 yccS 1863842..1866004 (-) 2163 WP_000875044.1 YccS family putative transporter -
  RZV12_RS08890 yccF 1866014..1866460 (-) 447 WP_001261231.1 YccF domain-containing protein -
  RZV12_RS08895 helD 1866583..1868637 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=815035 RZV12_RS08880 WP_000839153.1 1863250..1863879(+) (sxy/tfoX) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=815035 RZV12_RS08880 WP_000839153.1 1863250..1863879(+) (sxy/tfoX) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1