Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QBL76_RS04885 Genome accession   NZ_CP122304
Coordinates   1051280..1052959 (-) Length   559 a.a.
NCBI ID   WP_010719788.1    Uniprot ID   A0A1V8X977
Organism   Enterococcus hirae strain DSM 20160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1046280..1057959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL76_RS04855 (QBL76_04855) ftsL 1047308..1047703 (-) 396 WP_010719782.1 cell division protein FtsL -
  QBL76_RS04860 (QBL76_04860) rsmH 1047708..1048667 (-) 960 WP_034698806.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  QBL76_RS04865 (QBL76_04865) mraZ 1048688..1049119 (-) 432 WP_014834189.1 division/cell wall cluster transcriptional repressor MraZ -
  QBL76_RS04870 (QBL76_04870) - 1049291..1049659 (-) 369 WP_088745125.1 DUF3397 domain-containing protein -
  QBL76_RS04875 (QBL76_04875) - 1049915..1050871 (+) 957 WP_010738203.1 magnesium transporter CorA family protein -
  QBL76_RS04880 (QBL76_04880) - 1050941..1051057 (+) 117 WP_010719787.1 DUF4044 domain-containing protein -
  QBL76_RS04885 (QBL76_04885) recN 1051280..1052959 (-) 1680 WP_010719788.1 DNA repair protein RecN Machinery gene
  QBL76_RS04890 (QBL76_04890) argR 1052977..1053426 (-) 450 WP_010719789.1 arginine repressor -
  QBL76_RS04895 (QBL76_04895) - 1053526..1054344 (-) 819 WP_088745126.1 TlyA family RNA methyltransferase -
  QBL76_RS04900 (QBL76_04900) - 1054359..1055243 (-) 885 WP_088745127.1 polyprenyl synthetase family protein -
  QBL76_RS04905 (QBL76_04905) - 1055243..1055467 (-) 225 WP_010719792.1 exodeoxyribonuclease VII small subunit -
  QBL76_RS04910 (QBL76_04910) xseA 1055473..1056813 (-) 1341 WP_034698802.1 exodeoxyribonuclease VII large subunit -
  QBL76_RS04915 (QBL76_04915) - 1056814..1057659 (-) 846 WP_063626747.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63022.25 Da        Isoelectric Point: 4.5725

>NTDB_id=815030 QBL76_RS04885 WP_010719788.1 1051280..1052959(-) (recN) [Enterococcus hirae strain DSM 20160]
MLQEISITNFAIIPELHLSFHKGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFEWPSQEGFTELM
EELGIESDGDNLIVRRDMALTGKNVCRVNGHIVTLANLRRIGSYLVDIQGQNEHQELLQPEAHLNLLDRFGDRTFQQQKK
KYQKEYAIYRELERKMRKVQQNEKSFVQRIDMLHFQQEEIAAADLQVGEEEQLSEEREKLSNYQKIVDSFASGYSALSAG
EPSSVDNVGLAVSELQSIAHLDNEYEAIVENVQSAYYLLQDAIGDMSRQIDLLELDENRLEEVNQRLELIRQLKRKYGES
VEAILDYYEEITKELDSSDFSEGQLEKMQLELTKKETFLQEQALALHKTRKKIAKELEKSILTELKSLYMENTEFEVRFS
SEKNGQLDANGLDQVEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISCHSQVLCITHLPQVAAVADFQYYIQKEVIDGRTQTSVTELQPTQRETEIARMLAGSEITPLTVEHAKELLRLASK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=815030 QBL76_RS04885 WP_010719788.1 1051280..1052959(-) (recN) [Enterococcus hirae strain DSM 20160]
TTGTTACAAGAGATCAGTATTACTAATTTTGCGATTATTCCGGAATTGCATTTGTCTTTCCATAAAGGAATGACAGCTCT
AACTGGCGAGACCGGGGCAGGTAAATCGATTATCATTGATGCCCTTGGATTACTGGCTGGTGGTAGAGGCTCCAGTGATT
ATATTCGCCAAGGAGCCGATAAGTGTATCTTAGAAGGGTTGTTTGAATGGCCAAGTCAAGAAGGATTTACTGAATTGATG
GAAGAACTTGGCATCGAATCAGATGGTGATAACTTGATTGTTCGTCGTGATATGGCATTAACGGGTAAAAATGTCTGCCG
AGTCAATGGACATATTGTTACGCTGGCAAACCTTAGAAGGATCGGAAGTTATCTAGTTGATATTCAAGGACAAAATGAAC
ACCAGGAGCTATTACAACCAGAAGCCCATTTAAATTTATTGGATCGTTTTGGTGATCGTACTTTTCAACAACAAAAGAAA
AAATATCAAAAAGAGTATGCTATCTATCGTGAGCTCGAACGAAAAATGCGGAAAGTCCAACAAAATGAAAAATCATTTGT
TCAACGGATCGACATGCTTCATTTTCAACAAGAAGAAATCGCAGCAGCTGATTTACAAGTTGGCGAAGAGGAACAGTTAA
GCGAGGAAAGAGAAAAATTAAGCAATTATCAAAAGATCGTGGATAGTTTTGCTAGTGGTTATAGTGCATTGAGTGCGGGA
GAACCCAGTAGTGTGGATAACGTTGGTTTAGCTGTTTCTGAACTACAAAGCATTGCTCATCTAGATAATGAATATGAAGC
AATCGTTGAGAATGTTCAAAGTGCTTATTATTTACTTCAAGATGCCATTGGTGACATGAGTCGCCAAATCGATCTGCTGG
AATTGGATGAAAACCGATTAGAAGAAGTCAATCAACGGCTTGAATTGATTCGTCAGTTGAAACGCAAATATGGGGAGTCA
GTGGAAGCAATCCTTGATTATTACGAAGAAATCACTAAAGAACTGGATTCTTCTGATTTCTCAGAAGGTCAACTAGAAAA
AATGCAACTGGAATTAACTAAAAAAGAAACGTTCTTGCAAGAACAAGCATTAGCACTGCATAAAACAAGAAAAAAAATCG
CTAAAGAACTAGAAAAATCAATCTTAACGGAATTAAAAAGTCTATATATGGAAAACACTGAGTTTGAAGTCCGTTTTTCA
TCTGAAAAAAATGGACAATTAGATGCTAATGGATTGGACCAAGTGGAATTTTACATAACCACAAATCCTGGAGAACCATT
GAAGCCATTAGTAAAAGTTGCCTCAGGTGGGGAACTATCACGTATGTTGTTGGCGTTAAAAACTATTTTTTCTTCAGAAC
AAGGTGTGACTAGTATCATTTTTGATGAAGTGGATACAGGAGTAAGCGGTCGAGTTGCCCAAGCGATTGCAGATAAGATC
TCACAGATCTCATGTCACTCACAAGTTTTGTGTATTACCCATCTACCGCAAGTCGCTGCAGTTGCCGATTTTCAATACTA
TATTCAAAAAGAAGTCATTGATGGGCGTACCCAAACATCGGTTACCGAACTACAACCCACACAACGAGAGACCGAAATTG
CCCGAATGTTAGCAGGAAGTGAAATTACCCCACTAACAGTCGAGCATGCCAAAGAATTATTACGCTTAGCAAGTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8X977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.476

100

0.506