Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   YZOS03_RS09410 Genome accession   NZ_AP023185
Coordinates   1934594..1936015 (+) Length   473 a.a.
NCBI ID   WP_085569561.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain YZOS-03     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929594..1941015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YZOS03_RS09390 (YZOS03_17410) - 1930074..1930880 (-) 807 WP_213987694.1 adenosylcobinamide-GDP ribazoletransferase -
  YZOS03_RS09395 (YZOS03_17430) cobT 1930880..1931924 (-) 1045 Protein_1717 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  YZOS03_RS09400 (YZOS03_17440) - 1932173..1932862 (+) 690 WP_005377884.1 NAD(P)H-binding protein -
  YZOS03_RS09405 (YZOS03_17450) - 1933063..1934436 (+) 1374 WP_005377885.1 L-cystine transporter -
  YZOS03_RS09410 (YZOS03_17460) sbcB 1934594..1936015 (+) 1422 WP_085569561.1 exodeoxyribonuclease I Machinery gene
  YZOS03_RS09415 (YZOS03_17470) - 1936071..1936445 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  YZOS03_RS09420 (YZOS03_17480) - 1936447..1937124 (+) 678 WP_005377888.1 LrgB family protein -
  YZOS03_RS09425 (YZOS03_17490) cdd 1937555..1938442 (+) 888 WP_005377892.1 cytidine deaminase -
  YZOS03_RS09430 (YZOS03_17500) purT 1938586..1939761 (+) 1176 WP_064368105.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  YZOS03_RS09435 (YZOS03_17510) - 1939838..1940485 (-) 648 WP_248475593.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54388.58 Da        Isoelectric Point: 4.8633

>NTDB_id=81500 YZOS03_RS09410 WP_085569561.1 1934594..1936015(+) (sbcB) [Vibrio alginolyticus strain YZOS-03]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=81500 YZOS03_RS09410 WP_085569561.1 1934594..1936015(+) (sbcB) [Vibrio alginolyticus strain YZOS-03]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCACTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACTACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAGCATAGTAACGCGCACGATGCCATGGCAGATGTGGTTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment