Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   RYH83_RS29480 Genome accession   NZ_CP136539
Coordinates   6294823..6295347 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain GOM9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6289823..6300347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYH83_RS29465 (RYH83_29465) aroB 6290939..6292045 (-) 1107 WP_003161251.1 3-dehydroquinate synthase -
  RYH83_RS29470 (RYH83_29470) aroK 6292095..6292613 (-) 519 WP_003161250.1 shikimate kinase AroK -
  RYH83_RS29475 (RYH83_29475) pilQ 6292625..6294769 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  RYH83_RS29480 (RYH83_29480) comL/pilP 6294823..6295347 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RYH83_RS29485 (RYH83_29485) pilO 6295344..6295967 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  RYH83_RS29490 (RYH83_29490) pilN 6295964..6296560 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RYH83_RS29495 (RYH83_29495) pilM 6296560..6297624 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RYH83_RS29500 (RYH83_29500) - 6297809..6300280 (+) 2472 WP_003161248.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=814981 RYH83_RS29480 WP_003095836.1 6294823..6295347(-) (comL/pilP) [Pseudomonas aeruginosa strain GOM9]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=814981 RYH83_RS29480 WP_003095836.1 6294823..6295347(-) (comL/pilP) [Pseudomonas aeruginosa strain GOM9]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCATTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362