Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QBO96_RS15080 Genome accession   NZ_CP122283
Coordinates   2893069..2893635 (-) Length   188 a.a.
NCBI ID   WP_054548816.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain TSBLM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2888069..2898635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBO96_RS15060 (QBO96_15060) - 2889557..2890498 (-) 942 WP_066038355.1 YybS family protein -
  QBO96_RS15065 (QBO96_15065) - 2890961..2891710 (-) 750 WP_279493524.1 hypothetical protein -
  QBO96_RS15070 (QBO96_15070) - 2891710..2892201 (-) 492 WP_016992318.1 RNA polymerase sigma factor -
  QBO96_RS15075 (QBO96_15075) rpsR 2892792..2893028 (-) 237 WP_012296211.1 30S ribosomal protein S18 -
  QBO96_RS15080 (QBO96_15080) ssbA 2893069..2893635 (-) 567 WP_054548816.1 single-stranded DNA-binding protein Machinery gene
  QBO96_RS15085 (QBO96_15085) rpsF 2893679..2893966 (-) 288 WP_016992320.1 30S ribosomal protein S6 -
  QBO96_RS15090 (QBO96_15090) - 2894143..2894712 (+) 570 WP_054548815.1 DUF3267 domain-containing protein -
  QBO96_RS15095 (QBO96_15095) - 2894780..2895820 (-) 1041 WP_279493530.1 acyl-CoA dehydrogenase -
  QBO96_RS15100 (QBO96_15100) ychF 2895906..2897006 (-) 1101 WP_016994923.1 redox-regulated ATPase YchF -
  QBO96_RS15105 (QBO96_15105) - 2897104..2897304 (-) 201 WP_048395226.1 DUF951 domain-containing protein -
  QBO96_RS15110 (QBO96_15110) - 2897306..2898178 (-) 873 WP_054548813.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20537.50 Da        Isoelectric Point: 4.7719

>NTDB_id=814972 QBO96_RS15080 WP_054548816.1 2893069..2893635(-) (ssbA) [Lysinibacillus capsici strain TSBLM]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRAFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGQTYGNNQPSYGGGQPQQQFSGAMPGQGSYGGDSYQQNQPPMN
QPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=814972 QBO96_RS15080 WP_054548816.1 2893069..2893635(-) (ssbA) [Lysinibacillus capsici strain TSBLM]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCGAATGGAGTTGCGTCTAC
AAGATTTACAGTAGCTGTAAACCGTGCATTCTCAAATCAACAAGGTGAACGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGTAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAGACAGGC
AGTTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTCGTGGCGGATAGCGTACAGTTTTTAGAACCCCGTAA
TGGTAGCGGTGCTCCTGCTCCTCAATATGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAACCAC
AACAACAGTTTAGTGGCGCTATGCCAGGGCAGGGTTCCTATGGCGGCGATTCGTATCAGCAAAATCAACCACCTATGAAT
CAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCGAATAGCAAAGGGCCAATAGAAGTATCTGAGGATGATCTTCC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.319

100

0.553
  ssb Latilactobacillus sakei subsp. sakei 23K

47.34

100

0.473