Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QBO96_RS07475 Genome accession   NZ_CP122283
Coordinates   1399701..1402133 (-) Length   810 a.a.
NCBI ID   WP_131520513.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain TSBLM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394701..1407133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBO96_RS07465 (QBO96_07465) corA 1396709..1397674 (-) 966 WP_279495615.1 magnesium/cobalt transporter CorA -
  QBO96_RS07470 (QBO96_07470) hpaB 1398144..1399577 (-) 1434 WP_115674135.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  QBO96_RS07475 (QBO96_07475) recD2 1399701..1402133 (-) 2433 WP_131520513.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QBO96_RS07480 (QBO96_07480) hisA 1402323..1403090 (+) 768 WP_048392137.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  QBO96_RS07485 (QBO96_07485) - 1403087..1403374 (+) 288 WP_048392136.1 hypothetical protein -
  QBO96_RS07490 (QBO96_07490) - 1403921..1404670 (+) 750 WP_048392669.1 GTP pyrophosphokinase family protein -
  QBO96_RS07495 (QBO96_07495) - 1404760..1406205 (-) 1446 WP_066036483.1 MDR family MFS transporter -
  QBO96_RS07500 (QBO96_07500) - 1406378..1407037 (-) 660 WP_048392133.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90701.03 Da        Isoelectric Point: 4.7787

>NTDB_id=814960 QBO96_RS07475 WP_131520513.1 1399701..1402133(-) (recD2) [Lysinibacillus capsici strain TSBLM]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRVILEDPSALDAVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEQVLPLVKEMLEQSQRQEIPFEDISQACIGLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPQELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVPVDNEGMQEPVSVEQKLTVETAPYIHPMIGMN
DVSPYDFLDE

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=814960 QBO96_RS07475 WP_131520513.1 1399701..1402133(-) (recD2) [Lysinibacillus capsici strain TSBLM]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATCTTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACGAATTTGCAATATGAAGATAAAGAGATTATTGTTGTTG
GTTATTTTCCCCCACTACAAATGGATGAACAATATCGATTTACTGGTATTTTAAAACAGCATCCTAAATACGGTGCTCAA
TTTCAAATTGAGACATTTACAAAAGAGGTACCTGCAACTGAGCAAGGAATTATTCATTATTTATCTAGTGACCTCTTCGT
AGGGATCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTGCTAATGCACTCCGTGTTATTTTAGAAGATCCTA
GTGCCCTCGATGCTGTTCCGCGTCTATCCGCTGAAAAAAAAGAAGTCATTCACCGCACCATTGAGCAAAACTTAGGCTTA
GAGCGGGTCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTTGGGATGAAGATTTATCAAACCTATCGAACAGA
AGCCATTGAATTACTGACAGAAAATCCATACCGCTTGATTGAAGATGTGGAAGGAGTGGGTTTCTTTCGAGCCGACGAGC
TAGGTGCGAAATTAGGTATAACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCGGATGGACATGTTTATCTAGATGCAGAACAGGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAGGATATTTCTCAAGCCTGTATCGGACTCCGTGAAGAAGGCAAAATTTGTGGTGAAGAGACAAGGT
TATATTTGCCATCTCTCTATTTTTCGGAGGTAGGGATTGCATCGAAAATCTTATCGCTTATCGAGCGGAATAATAAGGCT
GAACATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATCGAACAGGCTTTAAATTCAGCTGTTATGATTTTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTCGTAGAAGTTTATGCAAAGCTTCATGGGCTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCGCCGACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTTCCTGCGATGACCAT
CCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGGGAAGTAACAGGTAAGCTGATTATCGTGG
ATGAAATGTCAATGGTTGATACATGGCTTGCCCATCAATTATTAAAAGCTTTACATGAAGATGTTCAAGTTGTCTTTGTT
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTGTTAAAGGATTTATTAGCATCCAAGCAGCTACCAACTGT
CGAGCTAACAGATGTTTATCGACAAGCAGAAGGCTCAACGATTATTGAACTTGCGCATCAAATAAAAAAAGGAACGATTC
CACAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATTAAGGCTTCAGCAGACCAAGTTGCCAACGTTGTTACTCAA
GTTGTCAAAAGTGCTGTCGCAAAGGGCCAGGAAATCCGTAATATTCAAGTGTTGGCGCCCATGTATAAAGGACCAGCTGG
TATAGATAATTTAAATAAAATGATTCAAGAGCTTATTAACCCAAATGATACTGGCACACGAAAAGAGCTAGTCTTTGGGG
ATGTCACCTATCGAATAAAGGATAAAGTTCTTCAGCTTGTCAATCAACCTGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTTATTAGTATTATTAAGGCGAAAGAGACGATCGAAAAACAAGATTTACTGATCGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGAAGCGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAATCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCAGATGTGCTTGCGGATGGTTTACAACGTACAGATGACCTTCAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGCCAGTAGATAATGAAG
GGATGCAGGAGCCTGTTTCCGTTGAACAAAAGCTAACAGTAGAAACAGCCCCTTATATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCATATGATTTTTTGGATGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.451

100

0.528