Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QBO96_RS05930 Genome accession   NZ_CP122283
Coordinates   1115344..1117035 (-) Length   563 a.a.
NCBI ID   WP_054549167.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain TSBLM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1110344..1122035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBO96_RS05910 (QBO96_05910) - 1110546..1111259 (-) 714 WP_279495468.1 hypothetical protein -
  QBO96_RS05915 (QBO96_05915) - 1111986..1112957 (-) 972 WP_279495469.1 tyrosine-type recombinase/integrase -
  QBO96_RS05920 (QBO96_05920) spo0A 1113098..1113889 (-) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  QBO96_RS05925 (QBO96_05925) - 1114274..1115221 (-) 948 WP_048392300.1 SpoIVB peptidase S55 domain-containing protein -
  QBO96_RS05930 (QBO96_05930) recN 1115344..1117035 (-) 1692 WP_054549167.1 DNA repair protein RecN Machinery gene
  QBO96_RS05935 (QBO96_05935) argR 1117069..1117518 (-) 450 WP_004231170.1 transcriptional regulator ArgR -
  QBO96_RS05940 (QBO96_05940) - 1117619..1118437 (-) 819 WP_004231167.1 TlyA family RNA methyltransferase -
  QBO96_RS05945 (QBO96_05945) dxs 1118437..1120338 (-) 1902 WP_048392297.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QBO96_RS05950 (QBO96_05950) - 1120502..1121383 (-) 882 WP_054549165.1 polyprenyl synthetase family protein -
  QBO96_RS05955 (QBO96_05955) xseB 1121387..1121620 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63451.26 Da        Isoelectric Point: 4.6214

>NTDB_id=814958 QBO96_RS05930 WP_054549167.1 1115344..1117035(-) (recN) [Lysinibacillus capsici strain TSBLM]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KNYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGTT
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=814958 QBO96_RS05930 WP_054549167.1 1115344..1117035(-) (recN) [Lysinibacillus capsici strain TSBLM]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGAAAATCTATTATCATTGATGCGGTGCATTTACTTGCAGGAGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGTGATTTGAATGATACCGGTAAAAGTATTTG
CCGAGTGAATGGAAAGCTCGTGCCTTTGTCGGTACTAAGAGACATTGGGGCAAGTCTCATAGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATCAATTTGCTTGATCAGTTTGCAGAAGAAGAGCTGTCGCCGATTCAA
AAAAACTATCGCGCCCAATATGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCTATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGTTCTAGTGCAGCCTATGAAGCCATTCAGGGC
GAAACGAAAGGGCTTGATTGGATCGGAACAGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAACAATTCAAAGA
ATCATCTGAGGCAGTGACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTGG
AATTTGACCCTGCACGTTTAAACGAGGTTGAGCAGCGTTTAGCGTTGTTGCAAACTTTAAAACGCAAATATGGTACGACA
GTGGAAGAGATTTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CTCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTCGATGCCAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAACCACCAAAGTC
TTTACCGAAAATTGCATCAGGTGGAGAATTATCACGAATGATGCTAGCGTTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATCTTTGATGAGGTGGATACAGGTGTCAGTGGTCGGGTTGCGCAGGCGATTGCAGAGAAAATTGCCGCG
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATTAA
AAAAGAAGTCGAGCATGATCGAACGTTTACTTCCTTATCAGAGATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACGGAAATTACAGCGTTGACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536