Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QA442_RS22010 Genome accession   NZ_CP121861
Coordinates   4260969..4262345 (-) Length   458 a.a.
NCBI ID   WP_095432282.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4255969..4267345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS21990 (QA442_21990) ispF 4257485..4257961 (-) 477 WP_014475594.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QA442_RS21995 (QA442_21995) ispD 4257954..4258652 (-) 699 WP_095432283.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QA442_RS22000 (QA442_22000) - 4258667..4259767 (-) 1101 WP_014662517.1 PIN/TRAM domain-containing protein -
  QA442_RS22005 (QA442_22005) disA 4259883..4260965 (-) 1083 WP_014662516.1 DNA integrity scanning diadenylate cyclase DisA -
  QA442_RS22010 (QA442_22010) radA 4260969..4262345 (-) 1377 WP_095432282.1 DNA repair protein RadA Machinery gene
  QA442_RS22015 (QA442_22015) clpC 4262437..4264869 (-) 2433 WP_014475592.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QA442_RS22020 (QA442_22020) - 4264866..4265957 (-) 1092 WP_095432281.1 protein arginine kinase -
  QA442_RS22025 (QA442_22025) mcsA 4265957..4266514 (-) 558 WP_041521234.1 protein-arginine kinase activator protein McsA -
  QA442_RS22030 (QA442_22030) ctsR 4266528..4266992 (-) 465 WP_071579242.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49408.91 Da        Isoelectric Point: 8.2399

>NTDB_id=814944 QA442_RS22010 WP_095432282.1 4260969..4262345(-) (radA) [Bacillus stercoris strain Mal05]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDAPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=814944 QA442_RS22010 WP_095432282.1 4260969..4262345(-) (radA) [Bacillus stercoris strain Mal05]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCAGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACTGTACAGAAACCTTCACCTATTACATCAATCGAAACATCAGAAGAACCCCGCGTTAAAACCCAGCTTGGCGAGTTT
AACAGAGTACTCGGCGGAGGTGTCGTTAAAGGCTCCCTCGTTTTAATCGGCGGTGATCCTGGTATCGGAAAGTCAACGTT
ATTACTGCAGGTTTCCGCTCAATTATCAGGCTCATCAAACAGTGTGCTGTATATTTCGGGAGAAGAATCTGTAAAGCAAA
CGAAGCTTCGAGCTGACCGCCTCGGCATTAATAATCCGTCACTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTATACCAAAGCGATATCACATCAGC
ACCGGGCAGTGTGTCACAGGTCAGAGAATGTACCGCCGAGCTGATGAAAATTGCAAAAACAAAAGGTATCCCGATTTTTA
TCGTAGGGCACGTGACGAAAGAAGGGTCTATTGCAGGGCCGAGACTGTTGGAGCATATGGTTGACACTGTTTTATATTTT
GAAGGAGAACGTCACCATACTTTCCGCATTTTGCGGGCTGTAAAAAACCGTTTCGGATCTACGAACGAAATGGGCATATT
TGAAATGCGGGAAGAGGGGCTCACTGAGGTTTTGAATCCTTCAGAAATTTTCTTAGAGGAACGCTCTGCGGGTTCCGCGG
GCTCGAGTATCACTGCTTCTATGGAGGGCACTAGACCGATTCTCGTTGAAATTCAGGCGCTCATCTCGCCAACAAGTTTT
GGAAATCCAAGGCGTATGGCAACGGGAATAGACCACAACAGGGTTTCTCTGTTAATGGCTGTGTTAGAAAAAAGAGTTGG
GCTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCTGGCGGCGTTAAGCTTGATGAACCGGCAATTGATCTTGCCA
TTGCGATCAGTATCGCATCAAGCTTTAGAGACGCACCTCCAAATCCTGCAGATTGTTTTATTGGAGAAGTGGGATTAACC
GGAGAAGTCCGGCGGGTTTCAAGAATTGAACAACGTGTGAAAGAAGCGGCAAAGCTTGGTTTTAAACGCATGATCATACC
CGCGGCTAATCTGGATGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

99.345

100

0.993
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624