Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QA442_RS20615 Genome accession   NZ_CP121861
Coordinates   3997316..3997765 (+) Length   149 a.a.
NCBI ID   WP_120698809.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3992316..4002765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS20595 (QA442_20595) hxlR 3993517..3993879 (-) 363 WP_014662740.1 transcriptional activator HxlR -
  QA442_RS20600 (QA442_20600) hxlA 3994112..3994744 (+) 633 WP_095431239.1 3-hexulose-6-phosphate synthase -
  QA442_RS20605 (QA442_20605) hxlB 3994750..3995307 (+) 558 WP_095431238.1 6-phospho-3-hexuloisomerase -
  QA442_RS20610 (QA442_20610) tlpC 3995418..3997139 (+) 1722 WP_095431237.1 methyl-accepting chemotaxis protein TlpC -
  QA442_RS20615 (QA442_20615) nucA/comI 3997316..3997765 (+) 450 WP_120698809.1 DNA-entry nuclease Machinery gene
  QA442_RS20620 (QA442_20620) nin/comJ 3997792..3998190 (+) 399 WP_095431236.1 DNA-entry nuclease inhibitor Regulator
  QA442_RS20625 (QA442_20625) bglC 3998227..3999660 (-) 1434 WP_095431235.1 6-phospho-beta-glucosidase -
  QA442_RS20630 (QA442_20630) - 3999733..4000461 (-) 729 WP_014662733.1 AAA family ATPase -
  QA442_RS20635 (QA442_20635) - 4000480..4000821 (-) 342 WP_095431234.1 DUF3147 family protein -
  QA442_RS20640 (QA442_20640) - 4000809..4001231 (-) 423 WP_041521243.1 MarR family transcriptional regulator -
  QA442_RS20645 (QA442_20645) - 4001357..4001689 (-) 333 WP_095431249.1 YckD family protein -
  QA442_RS20650 (QA442_20650) - 4001770..4002214 (-) 445 Protein_4025 RDD family protein -
  QA442_RS20655 (QA442_20655) - 4002247..4002409 (-) 163 Protein_4026 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16391.38 Da        Isoelectric Point: 4.4321

>NTDB_id=814941 QA442_RS20615 WP_120698809.1 3997316..3997765(+) (nucA/comI) [Bacillus stercoris strain Mal05]
MNITMDIIKTILLVIVVIAAAAVGLIKGDFFSADQKTSQTKEYDETIALPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=814941 QA442_RS20615 WP_120698809.1 3997316..3997765(+) (nucA/comI) [Bacillus stercoris strain Mal05]
GTGAACATCACGATGGACATCATAAAAACAATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCGGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGACGAAACGATCGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCGCCAAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAATCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

94.631

100

0.946