Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QA442_RS16835 Genome accession   NZ_CP121861
Coordinates   3223498..3224076 (-) Length   192 a.a.
NCBI ID   WP_095432681.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218498..3229076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS16800 (QA442_16800) lepB 3218503..3219009 (-) 507 WP_014663449.1 signal peptidase I -
  QA442_RS16805 (QA442_16805) - 3219011..3219634 (-) 624 WP_014663448.1 TVP38/TMEM64 family protein -
  QA442_RS16810 (QA442_16810) - 3219787..3220149 (+) 363 WP_069149320.1 hypothetical protein -
  QA442_RS16815 (QA442_16815) - 3220359..3220559 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QA442_RS16820 (QA442_16820) - 3220556..3222025 (+) 1470 WP_095432679.1 sodium:solute symporter -
  QA442_RS16825 (QA442_16825) - 3222069..3222338 (-) 270 WP_014663444.1 excalibur calcium-binding domain-containing protein -
  QA442_RS16830 (QA442_16830) - 3222554..3223453 (+) 900 WP_095432680.1 SDR family oxidoreductase -
  QA442_RS16835 (QA442_16835) comK 3223498..3224076 (-) 579 WP_095432681.1 competence transcription factor ComK Regulator
  QA442_RS16840 (QA442_16840) - 3224369..3224602 (+) 234 WP_071582266.1 IDEAL domain-containing protein -
  QA442_RS16845 (QA442_16845) - 3224629..3225486 (-) 858 WP_014663440.1 SDR family oxidoreductase -
  QA442_RS16850 (QA442_16850) - 3225598..3227127 (+) 1530 WP_095432682.1 FAD-dependent oxidoreductase -
  QA442_RS16855 (QA442_16855) hemAT 3227266..3228564 (+) 1299 WP_040083529.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22384.62 Da        Isoelectric Point: 7.7153

>NTDB_id=814930 QA442_RS16835 WP_095432681.1 3223498..3224076(-) (comK) [Bacillus stercoris strain Mal05]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTLELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=814930 QA442_RS16835 WP_095432681.1 3223498..3224076(-) (comK) [Bacillus stercoris strain Mal05]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGTGTGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCTCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGTTGGAGCTGC
CGATCTCCTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99