Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   QA442_RS16400 Genome accession   NZ_CP121861
Coordinates   3139331..3140284 (-) Length   317 a.a.
NCBI ID   WP_095432630.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3134331..3145284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS16370 (QA442_16370) appD 3134463..3135449 (-) 987 WP_095432628.1 oligopeptide ABC transporter ATP-binding protein AppD -
  QA442_RS16375 (QA442_16375) - 3135641..3136426 (-) 786 WP_095432629.1 DUF2268 domain-containing protein -
  QA442_RS16380 (QA442_16380) fabF 3136501..3137742 (-) 1242 WP_014663520.1 beta-ketoacyl-ACP synthase II -
  QA442_RS16385 (QA442_16385) fabH 3137765..3138703 (-) 939 WP_014663519.1 beta-ketoacyl-ACP synthase III -
  QA442_RS16390 (QA442_16390) - 3138868..3139095 (+) 228 WP_080478200.1 hypothetical protein -
  QA442_RS16395 (QA442_16395) comZ 3139125..3139316 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  QA442_RS16400 (QA442_16400) med 3139331..3140284 (-) 954 WP_095432630.1 transcriptional regulator Med Regulator
  QA442_RS16405 (QA442_16405) - 3140374..3140928 (-) 555 WP_095432631.1 hypothetical protein -
  QA442_RS16410 (QA442_16410) - 3141010..3141744 (-) 735 WP_095432632.1 hypothetical protein -
  QA442_RS16415 (QA442_16415) - 3141995..3142180 (+) 186 WP_003245236.1 DUF2929 domain-containing protein -
  QA442_RS16420 (QA442_16420) - 3142226..3142405 (-) 180 WP_003245356.1 YjzC family protein -
  QA442_RS16425 (QA442_16425) argF 3142491..3143450 (-) 960 WP_040083464.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35298.74 Da        Isoelectric Point: 4.4629

>NTDB_id=814928 QA442_RS16400 WP_095432630.1 3139331..3140284(-) (med) [Bacillus stercoris strain Mal05]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLDTGVVEMGTFSPLVDEDFQQRIAKLIKTYNKTGDLPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=814928 QA442_RS16400 WP_095432630.1 3139331..3140284(-) (med) [Bacillus stercoris strain Mal05]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGACAATGTGACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACCAATCAGGTCGGTGTCATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGAGCCAAGTATGAAAATCCAGATATAGAAGTAAACACGAAATATACGGATCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCTGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGGCTTTATGCCATCGGCTACGTCACAGATCAATCGGACTTG
GGTGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTTGATACGGGAGTAGTCGAGATGGGAACATTCAGCCCGCTCGTCGATG
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGATCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.054

100

0.991