Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   QA442_RS16275 Genome accession   NZ_CP121861
Coordinates   3115674..3116795 (-) Length   373 a.a.
NCBI ID   WP_279474515.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 3110674..3121795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS16250 (QA442_16250) cwlQ 3110815..3111549 (+) 735 WP_255220421.1 bifunctional muramidase/murein lytic transglycosylase -
  QA442_RS16255 (QA442_16255) - 3111801..3112199 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  QA442_RS16260 (QA442_16260) spxH 3112196..3113095 (+) 900 WP_041521296.1 protease adaptor protein SpxH -
  QA442_RS16265 (QA442_16265) - 3113409..3113576 (+) 168 WP_069839006.1 hypothetical protein -
  QA442_RS16270 (QA442_16270) pepF 3113615..3115444 (-) 1830 WP_168780813.1 oligoendopeptidase F -
  QA442_RS16275 (QA442_16275) coiA 3115674..3116795 (-) 1122 WP_279474515.1 competence protein CoiA Machinery gene
  QA442_RS16280 (QA442_16280) - 3116869..3116991 (+) 123 WP_141237732.1 hypothetical protein -
  QA442_RS16285 (QA442_16285) mecA 3116986..3117642 (-) 657 WP_095432621.1 adaptor protein MecA Regulator
  QA442_RS16290 (QA442_16290) - 3117609..3117749 (-) 141 WP_134975725.1 hypothetical protein -
  QA442_RS16295 (QA442_16295) - 3117919..3118575 (+) 657 WP_040083448.1 TerC family protein -
  QA442_RS16300 (QA442_16300) spx 3118830..3119225 (-) 396 WP_003245483.1 transcriptional regulator Spx -
  QA442_RS16305 (QA442_16305) - 3119406..3119984 (-) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  QA442_RS16310 (QA442_16310) - 3120148..3121365 (-) 1218 WP_095432622.1 MFS transporter -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43853.89 Da        Isoelectric Point: 9.8738

>NTDB_id=814923 QA442_RS16275 WP_279474515.1 3115674..3116795(-) (coiA) [Bacillus stercoris strain Mal05]
MFHLLGAQQSQKLKRKRFFCPVCGEELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQKASPILEP
YIKEINQRPDVMARIKERMLAVEYQCATISPDVFQKRTEGFKQAGIIPQWIMGHSRLQRTASSFYQLSAFHWQFINANPY
RELICYCPERRSFLRLSHIIPFYTTHSYSSVQTIPIHRAGIDDLFFTEPKSSIQYSGWTKAIHRFRHKPHRFNSKETNRL
KQLFYEKRQTPFSFLPTEVFVPVVKGAVFKSPVFVWQGFLYLFITDLGEKHAPIRFSAVLQQCKLHIHKKNMALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPADGIRSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=814923 QA442_RS16275 WP_279474515.1 3115674..3116795(-) (coiA) [Bacillus stercoris strain Mal05]
ATGTTTCACCTTCTGGGCGCTCAGCAAAGCCAAAAATTAAAGCGGAAACGATTCTTCTGTCCGGTATGCGGAGAAGAGCT
TGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGACATAGAACCGG
AAAGCGCCTACCATTTAGAAGGAAAAAGACAGCTGTACGTATGGCTGAAAACGCAAAAGGCTTCTCCCATATTGGAACCG
TATATAAAGGAAATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGAGCGTATGCTTGCTGTTGAATATCAATGTGC
CACGATCAGTCCGGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGCAGGGATCATCCCGCAGTGGATTATGGGAC
ACAGCCGCTTACAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTTCATTGGCAGTTTATCAATGCAAACCCATAC
AGAGAACTGATATGTTATTGTCCGGAAAGGCGTTCTTTTCTCCGGCTCAGCCACATCATTCCATTCTACACAACCCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTATAGACGATCTTTTTTTTACTGAACCGAAATCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATACACCGTTTTCGCCATAAACCCCATCGGTTTAACTCAAAGGAAACAAATCGCCTT
AAGCAGCTGTTTTATGAGAAGCGGCAGACGCCCTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTGTAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTACCTGTTTATCACGGATCTTGGAGAGAAACATGCGCCAA
TTCGTTTTTCAGCCGTTTTACAGCAATGCAAACTGCACATTCATAAAAAGAACATGGCACTCAGATTCGAATGCAGCGAA
GAGTGTCTTTCTGAAGCTGTTAAACAGTACATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAACCAGCCTGCAGATGGCATTCGCTCAATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

92.225

100

0.922