Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QA442_RS14665 Genome accession   NZ_CP121861
Coordinates   2827610..2827888 (-) Length   92 a.a.
NCBI ID   WP_014663823.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2822610..2832888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS14645 (QA442_14645) ade 2822676..2824409 (-) 1734 WP_095431395.1 adenine deaminase -
  QA442_RS14650 (QA442_14650) ktrC 2824563..2825228 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  QA442_RS14655 (QA442_14655) - 2825290..2826117 (-) 828 WP_095431396.1 gamma-glutamylcyclotransferase -
  QA442_RS14660 (QA442_14660) kinC 2826133..2827419 (-) 1287 WP_040083258.1 two-component sensor histidine kinase KinC -
  QA442_RS14665 (QA442_14665) abrB 2827610..2827888 (-) 279 WP_014663823.1 transcriptional regulator AbhA Regulator
  QA442_RS14670 (QA442_14670) mreBH 2828171..2829178 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  QA442_RS14675 (QA442_14675) - 2829279..2829413 (+) 135 WP_003238865.1 protein YkpC -
  QA442_RS14680 (QA442_14680) - 2829524..2830756 (+) 1233 WP_279473283.1 aminopeptidase -
  QA442_RS14685 (QA442_14685) - 2830789..2831700 (-) 912 WP_095431398.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=814917 QA442_RS14665 WP_014663823.1 2827610..2827888(-) (abrB) [Bacillus stercoris strain Mal05]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKDYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=814917 QA442_RS14665 WP_014663823.1 2827610..2827888(-) (abrB) [Bacillus stercoris strain Mal05]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGATTACGGCAACGGCAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576