Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QA442_RS13835 Genome accession   NZ_CP121861
Coordinates   2662130..2663023 (-) Length   297 a.a.
NCBI ID   WP_071580709.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2657130..2668023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS13820 (QA442_13820) xerC 2657502..2658416 (-) 915 WP_095431299.1 tyrosine recombinase XerC -
  QA442_RS13825 (QA442_13825) trmFO 2658484..2659791 (-) 1308 WP_069149591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QA442_RS13830 (QA442_13830) topA 2659867..2661942 (-) 2076 WP_014663959.1 type I DNA topoisomerase -
  QA442_RS13835 (QA442_13835) dprA 2662130..2663023 (-) 894 WP_071580709.1 DNA-processing protein DprA Machinery gene
  QA442_RS13840 (QA442_13840) sucD 2663084..2663986 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  QA442_RS13845 (QA442_13845) sucC 2664015..2665172 (-) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  QA442_RS13850 (QA442_13850) - 2665347..2665628 (-) 282 WP_014663956.1 FlhB-like flagellar biosynthesis protein -
  QA442_RS13855 (QA442_13855) - 2665625..2667352 (-) 1728 WP_095431298.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32917.27 Da        Isoelectric Point: 10.0637

>NTDB_id=814916 QA442_RS13835 WP_071580709.1 2662130..2663023(-) (dprA) [Bacillus stercoris strain Mal05]
MDQAAACLTTCRINQLLSPSLLLKWWKADPSMSLTSSVLQTVTRDKMKAAALKKKIEEFYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTEELCRKGWVIVSGLASGIDGMAHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIRSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=814916 QA442_RS13835 WP_071580709.1 2662130..2663023(-) (dprA) [Bacillus stercoris strain Mal05]
TTGGATCAGGCCGCTGCCTGCTTAACGACTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCATCGGTGTTACAAACGGTTACTCGTGATAAAATGAAAGCAGCTGCATTAAAAA
AGAAAATAGAAGAATTTTACCCAAAGCTCCAACGCGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATTCCTATC
TCTTCAAAGCAATATCCTTTCTGGCTTAAAACCATTTATGATCCTCCCGCCGTTCTGTTTGCAAAGGGTGATATGACTCT
TCTTTCGAAAGGAAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTACGGGAAACAAGTTGTCAATCATCTTA
CAGAAGAGCTATGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGGCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGGGAAAACCTTCAATTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGACTGAGTGAAGGCGTTATTGTCGTACAGGGCAAGGAAAAAAGCGGTTCGCTGATAACTGCC
TATCAAGCATTGGAGCAAGGTAGAGAAGTGTTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATAAGGTCAGCAGAGGATATTTTCGAGGAGCTTCCCGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

95.286

100

0.953
  dprA Legionella pneumophila strain ERS1305867

38.929

94.276

0.367