Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QA442_RS10585 Genome accession   NZ_CP121861
Coordinates   2005206..2005826 (-) Length   206 a.a.
NCBI ID   WP_014664374.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2000206..2010826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS10565 (QA442_10565) dnaD 2000499..2001197 (+) 699 WP_014664378.1 DNA replication protein DnaD -
  QA442_RS10570 (QA442_10570) nth 2001216..2001875 (+) 660 WP_014664377.1 endonuclease III -
  QA442_RS10575 (QA442_10575) - 2001872..2002366 (+) 495 WP_095431527.1 YpoC family protein -
  QA442_RS10580 (QA442_10580) - 2002440..2005184 (-) 2745 WP_095431528.1 PBP1A family penicillin-binding protein -
  QA442_RS10585 (QA442_10585) recU 2005206..2005826 (-) 621 WP_014664374.1 Holliday junction resolvase RecU Machinery gene
  QA442_RS10590 (QA442_10590) - 2005867..2006829 (+) 963 WP_095431529.1 DUF2515 domain-containing protein -
  QA442_RS10595 (QA442_10595) sspM 2006854..2006958 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QA442_RS10600 (QA442_10600) - 2007156..2007401 (+) 246 WP_279474342.1 DUF5446 family protein -
  QA442_RS10605 (QA442_10605) - 2007447..2007818 (+) 372 WP_014664371.1 YppE family protein -
  QA442_RS10610 (QA442_10610) - 2007858..2008046 (-) 189 WP_003230690.1 YppF family protein -
  QA442_RS10615 (QA442_10615) - 2008233..2008610 (+) 378 WP_014664370.1 YppG family protein -
  QA442_RS10620 (QA442_10620) - 2008631..2009050 (-) 420 WP_014664369.1 Hsp20/alpha crystallin family protein -
  QA442_RS10625 (QA442_10625) - 2009189..2009695 (+) 507 WP_279474345.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23902.03 Da        Isoelectric Point: 9.6240

>NTDB_id=814912 QA442_RS10585 WP_014664374.1 2005206..2005826(-) (recU) [Bacillus stercoris strain Mal05]
MIRYPNGKTFQPKHSVSSQSSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=814912 QA442_RS10585 WP_014664374.1 2005206..2005826(-) (recU) [Bacillus stercoris strain Mal05]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAGCAGTCAGAAAAGGGCCCCGTC
ATACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAT
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAACATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAGGAAGCGGCTTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99