Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8775_RS06380 Genome accession   NZ_AP026915
Coordinates   1236760..1238511 (-) Length   583 a.a.
NCBI ID   WP_050233471.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231760..1243511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS06335 (PC0005_12460) - 1231792..1232379 (-) 588 WP_000821287.1 CPBP family intramembrane glutamic endopeptidase -
  R8775_RS06340 - 1232382..1232615 (-) 234 Protein_1254 transcriptional regulator -
  R8775_RS06345 (PC0005_12480) - 1232628..1233008 (-) 381 WP_000566531.1 arsenate reductase family protein -
  R8775_RS06350 (PC0005_12490) - 1233001..1233341 (-) 341 Protein_1256 hypothetical protein -
  R8775_RS06355 (PC0005_12500) - 1233352..1233603 (-) 252 Protein_1257 replication initiator protein A -
  R8775_RS06360 (PC0005_12510) - 1233603..1233773 (-) 171 WP_001168348.1 hypothetical protein -
  R8775_RS06365 (PC0005_12520) rplL 1233960..1234328 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  R8775_RS06370 (PC0005_12530) rplJ 1234404..1234904 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  R8775_RS06375 (PC0005_12540) - 1235154..1236413 (-) 1260 WP_000862488.1 TRZ/ATZ family protein -
  R8775_RS06380 (PC0005_12550) rcrQ 1236760..1238511 (-) 1752 WP_050233471.1 ABC transporter ATP-binding protein Regulator
  R8775_RS06385 (PC0005_12560) - 1238513..1240237 (-) 1725 WP_050233470.1 ABC transporter ATP-binding protein -
  R8775_RS06390 (PC0005_12570) msrB 1240295..1241233 (-) 939 WP_000818207.1 peptide-methionine (R)-S-oxide reductase MsrB -
  R8775_RS06395 (PC0005_12580) - 1241300..1241902 (-) 603 WP_317680891.1 hypothetical protein -
  R8775_RS06400 (PC0005_12590) thrB 1241978..1242847 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64903.43 Da        Isoelectric Point: 7.3119

>NTDB_id=81491 R8775_RS06380 WP_050233471.1 1236760..1238511(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700005]
MKRQTVNQTLKRLAVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKKSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSALTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDI
LLDGQSIYDYTRVSLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESL
SVGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGN
HQELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=81491 R8775_RS06380 WP_050233471.1 1236760..1238511(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700005]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
TTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGAGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCCTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTCAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAAATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGTCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAGCCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACA
TGTCTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCA
TCGTTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATC
TTGCTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTG
GCTCACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCA
AAGCAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTC
TCTGTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAAC
TTCTTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGTTTCATCA
TTGCTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAAC
CATCAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(360-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.544

97.77

0.367

Multiple sequence alignment