Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QA442_RS09055 Genome accession   NZ_CP121861
Coordinates   1736040..1736807 (+) Length   255 a.a.
NCBI ID   WP_014664644.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1731040..1741807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS09025 (QA442_09025) pgpH 1731336..1733471 (+) 2136 WP_095431713.1 cyclic-di-AMP phosphodiesterase PgpH -
  QA442_RS09030 (QA442_09030) ybeY 1733472..1733945 (+) 474 WP_095431712.1 rRNA maturation RNase YbeY -
  QA442_RS09035 (QA442_09035) - 1733926..1734297 (+) 372 WP_095431711.1 diacylglycerol kinase family protein -
  QA442_RS09040 (QA442_09040) - 1734416..1734826 (+) 411 WP_014664646.1 cytidine deaminase -
  QA442_RS09045 (QA442_09045) era 1734807..1735712 (+) 906 WP_014664645.1 GTPase Era -
  QA442_RS09050 (QA442_09050) - 1735860..1736003 (+) 144 WP_003230053.1 YqzL family protein -
  QA442_RS09055 (QA442_09055) recO 1736040..1736807 (+) 768 WP_014664644.1 DNA repair protein RecO Machinery gene
  QA442_RS09060 (QA442_09060) glyQ 1737104..1737991 (+) 888 WP_040083765.1 glycine--tRNA ligase subunit alpha -
  QA442_RS09065 (QA442_09065) glyS 1737984..1740024 (+) 2041 Protein_1750 glycine--tRNA ligase subunit beta -
  QA442_RS09070 (QA442_09070) ccpN 1740157..1740795 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  QA442_RS09075 (QA442_09075) - 1740821..1741633 (+) 813 WP_014664641.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29370.06 Da        Isoelectric Point: 8.3088

>NTDB_id=814900 QA442_RS09055 WP_014664644.1 1736040..1736807(+) (recO) [Bacillus stercoris strain Mal05]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEERKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=814900 QA442_RS09055 WP_014664644.1 1736040..1736807(+) (recO) [Bacillus stercoris strain Mal05]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTTTTAATGCAAAAAACATCAGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGCGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCCTATGCCGCATATATTGCTGAATTAGTCGACAGAGGCACAGAGGAAAGAAAGCC
AAATCCTTATTTATTTGAATTTATATTAGAATCACTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACTTTTCACTTTTCTGTCCGTGATAATGGTTTTATATGCCATCGCTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACAGCAAGGCTGTTGAGACTCTTTTATTACTTCGATCTGTCGAGGCTGGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTGTATTACGAAGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992