Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QA442_RS07840 Genome accession   NZ_CP121861
Coordinates   1522613..1523359 (+) Length   248 a.a.
NCBI ID   WP_095432364.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1517613..1528359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS07825 (QA442_07825) - 1517840..1518031 (-) 192 WP_003222590.1 hypothetical protein -
  QA442_RS07830 (QA442_07830) valS 1518479..1521121 (+) 2643 WP_095432366.1 valine--tRNA ligase -
  QA442_RS07835 (QA442_07835) - 1521181..1522473 (+) 1293 WP_095432365.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QA442_RS07840 (QA442_07840) comC 1522613..1523359 (+) 747 WP_095432364.1 A24 family peptidase Machinery gene
  QA442_RS07845 (QA442_07845) - 1523493..1524491 (+) 999 WP_095432363.1 SPOR domain-containing protein -
  QA442_RS07850 (QA442_07850) - 1524643..1525212 (+) 570 WP_040082267.1 Maf family nucleotide pyrophosphatase -
  QA442_RS07855 (QA442_07855) radC 1525249..1525944 (+) 696 WP_014664850.1 DNA repair protein RadC -
  QA442_RS07860 (QA442_07860) mreB 1526036..1527049 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QA442_RS07865 (QA442_07865) mreC 1527080..1527952 (+) 873 WP_040082268.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26583.18 Da        Isoelectric Point: 10.1313

>NTDB_id=814893 QA442_RS07840 WP_095432364.1 1522613..1523359(+) (comC) [Bacillus stercoris strain Mal05]
MLFILFIFGLILGSFYYTAGRRIPLHLSIIAPRSSCSFCRRALTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELMTA
CLFAAAGIRFGMSLELLTAVVFFSLLIIVAVTDLHYMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLAKKQPLPFAPAIAAGSILTYLYGNSIIS
FYIKMASG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=814893 QA442_RS07840 WP_095432364.1 1522613..1523359(+) (comC) [Bacillus stercoris strain Mal05]
ATGCTATTCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGCGCCGTATCCCCTTACATCT
ATCTATTATCGCGCCCCGTTCATCATGCTCGTTTTGCCGGCGGGCTTTGACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCGGCAGAGCTTATGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATGTCGCTGGAATTATTAACCGCTGTCGTGTTTTTCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTATATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCTGCAGCCGGATTTCTATTTCTGGCTTTAATT
GCCGCAATCACTCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCGGCTGCCTTTTTCTTTTCTGTTTTGATAGGCGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCCA
AAAAGCAGCCGCTTCCCTTTGCCCCTGCAATAGCGGCAGGGAGTATTTTAACCTATTTATATGGGAACTCTATCATTTCG
TTTTATATCAAAATGGCATCGGGATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.145

100

0.931