Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QA442_RS00775 Genome accession   NZ_CP121861
Coordinates   143751..144269 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus stercoris strain Mal05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 138751..149269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS00755 (QA442_00755) - 139825..140031 (+) 207 WP_003219236.1 DUF951 domain-containing protein -
  QA442_RS00760 (QA442_00760) - 140082..142085 (+) 2004 WP_095430962.1 molybdopterin-dependent oxidoreductase -
  QA442_RS00765 (QA442_00765) ychF 142212..143312 (+) 1101 WP_014666140.1 redox-regulated ATPase YchF -
  QA442_RS00770 (QA442_00770) rpsF 143423..143710 (+) 288 WP_014115888.1 30S ribosomal protein S6 -
  QA442_RS00775 (QA442_00775) ssbA 143751..144269 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  QA442_RS00780 (QA442_00780) rpsR 144313..144552 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  QA442_RS00785 (QA442_00785) xth 144613..145371 (+) 759 WP_095430963.1 exodeoxyribonuclease III -
  QA442_RS00790 (QA442_00790) - 145433..146368 (+) 936 WP_095430964.1 LacI family DNA-binding transcriptional regulator -
  QA442_RS00795 (QA442_00795) - 146423..146803 (+) 381 WP_014666135.1 VOC family protein -
  QA442_RS00800 (QA442_00800) - 146821..147375 (+) 555 WP_014666134.1 sugar O-acetyltransferase -
  QA442_RS00805 (QA442_00805) - 147409..148764 (-) 1356 WP_095430965.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=814873 QA442_RS00775 WP_003219228.1 143751..144269(+) (ssbA) [Bacillus stercoris strain Mal05]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=814873 QA442_RS00775 WP_003219228.1 143751..144269(+) (ssbA) [Bacillus stercoris strain Mal05]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGATGGC
AAACCGATTGACATCTCGGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378