Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QA442_RS00670 Genome accession   NZ_CP121861
Coordinates   123018..124130 (-) Length   370 a.a.
NCBI ID   WP_040081112.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 118018..129130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS00655 (QA442_00655) gyrA 118109..120574 (-) 2466 WP_014662458.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  QA442_RS00660 (QA442_00660) gyrB 120785..122701 (-) 1917 WP_095430956.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QA442_RS00665 (QA442_00665) remB 122755..123000 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  QA442_RS00670 (QA442_00670) recF 123018..124130 (-) 1113 WP_040081112.1 DNA replication/repair protein RecF Machinery gene
  QA442_RS00675 (QA442_00675) rlbA 124146..124361 (-) 216 WP_003219264.1 ribosome maturation protein RlbA -
  QA442_RS00680 (QA442_00680) dnaN 124492..125628 (-) 1137 WP_014662455.1 DNA polymerase III subunit beta -
  QA442_RS00685 (QA442_00685) dnaA 125817..127157 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  QA442_RS00690 (QA442_00690) rpmH 127784..127918 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  QA442_RS00695 (QA442_00695) rnpA 128070..128420 (+) 351 WP_003236647.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42276.29 Da        Isoelectric Point: 7.3660

>NTDB_id=814872 QA442_RS00670 WP_040081112.1 123018..124130(-) (recF) [Bacillus stercoris strain Mal05]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPVHAGISRGLEELTLKYHTALDVSDPVDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=814872 QA442_RS00670 WP_040081112.1 123018..124130(-) (recF) [Bacillus stercoris strain Mal05]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGTGAAAACGCCCAGGGGAAGACAAACCTTATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACAGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGACCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTAAAACAGCTGCAAACAAGAAAACAAACAGACCGGACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCCGTCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCTTGAAGTACCATACAGCTCTTGATGTATCAGATCCCGTAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGTGTTACTTTGTCAGGGCCTCATCG
TGACGATGTCCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995