Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QA442_RS00445 Genome accession   NZ_CP121861
Coordinates   82498..82788 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus stercoris strain Mal05     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 77498..87788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS00430 (QA442_00430) - 77694..79007 (-) 1314 WP_095432917.1 ubiquitin-like domain-containing protein -
  QA442_RS00435 (QA442_00435) - 79163..79930 (-) 768 WP_014475570.1 TatD family hydrolase -
  QA442_RS00440 (QA442_00440) metG 80009..82003 (-) 1995 WP_095432916.1 methionine--tRNA ligase -
  QA442_RS00445 (QA442_00445) abrB 82498..82788 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  QA442_RS00450 (QA442_00450) rsmI 82837..83715 (-) 879 WP_014662478.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QA442_RS00455 (QA442_00455) - 83690..83989 (-) 300 WP_014662477.1 GIY-YIG nuclease family protein -
  QA442_RS00460 (QA442_00460) - 83976..84719 (-) 744 WP_095432915.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QA442_RS00465 (QA442_00465) yabA 84778..85137 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  QA442_RS00470 (QA442_00470) ricT 85152..85979 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  QA442_RS00475 (QA442_00475) holB 85982..86971 (-) 990 WP_095432914.1 DNA polymerase III subunit delta' -
  QA442_RS00480 (QA442_00480) - 86983..87423 (-) 441 WP_071582142.1 YaaR family protein -
  QA442_RS00485 (QA442_00485) darA 87436..87765 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=814870 QA442_RS00445 WP_003226760.1 82498..82788(+) (abrB) [Bacillus stercoris strain Mal05]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=814870 QA442_RS00445 WP_003226760.1 82498..82788(+) (abrB) [Bacillus stercoris strain Mal05]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTAC
TCTCGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1